Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq1792 132 5e-29 seq2673 125 8e-27 >seq1792 Length=5876 Score = 132 bits (146), Expect = 5e-29 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| |||||||| | |||||||||| | | | | ||||||||| Sbjct 3460 CGGGGTCTTTCCGTCTAGCCGCGGGTACACCGCATCTTCACGGCGATTTCGATTTCACTG 3519 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 ||| | | ||||||| || |||||||||||||||||||||||||| Sbjct 3520 AGCCTCTGCTGGAGACAGCGCCCCCATCATTATGCCATTCGTGCAGGTCGGAACTTACCC 3579 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 3580 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 3639 >seq2673 Length=9083 Score = 125 bits (138), Expect = 8e-27 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| ||||| ||| |||| ||||||| || || | ||||||| | | Sbjct 1253 CGGGGTCTTTCCGTCCTGCTGCGCGTAACGAGCATCTTTACTCGTAATGCAATTTCGCCG 1312 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || ||| ||| ||||||| ||| |||||||||||||||||||||||||| Sbjct 1313 AGTTCATGGTGGAGACAGCTGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 1372 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTT 201 ||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 1373 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTT 1431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547180545330