Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq989 399 5e-109 seq2673 223 7e-56 >seq989 Length=5214 Score = 399 bits (442), Expect = 5e-109 Identities = 293/337 (87%), Gaps = 4/337 (1%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| | ||| ||||||| |||||||||||||| |||||||||||| || | ||| Sbjct 1470 CTTTACAACCATAAGGCCTTCTT-CACACACGCGGCAT-GGCTGGATCAGGGTTCCCCCC 1527 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 1528 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 1587 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| | ||||||||||||||||| | ||| ||||||||||||||| ||| ||||| || Sbjct 1588 TGTGGCGGATCATCCTCTCAGACCCGCTACAGATCGTCGCCTTGGTAGGCCTTTACCCCA 1647 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAA--GGTCCCCTGC 238 |||||||||||||||||| ||||||||||| || ||||||| | || | |||||||| Sbjct 1648 CCAACTAGCTAATCCGACTTAGGCTCATCTATTAACGCAAGGTCACAAGTGATCCCCTGC 1707 Query 239 TTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACC 298 |||| |||||||| |||||||||||||||| ||| |||| | ||| ||||||| || Sbjct 1708 TTTCCCCCGTAGGGCGTATGCGGTATTAGCATCCCTTTCGAGATGTTGTCCCCCATTAAT 1767 Query 299 AGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||||||||||||| | ||||||||||||||||||||| Sbjct 1768 AGGCAGATTCCTAAGTATTACTCACCCGTCCGCCGCT 1804 >seq2673 Length=9083 Score = 223 bits (246), Expect = 7e-56 Identities = 166/192 (86%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| |||||| || || | | | |||||||| ||| ||| ||||||||| |||||| Sbjct 5086 TTTACAACCCGAAGGCCGTCATCC-CTCACGCGGCGTTG-CTGCATCAGGCTTGCGCCCA 5143 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 5144 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 5203 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| | | ||| |||||||| || | ||| |||||||||||||||||||||||||||| Sbjct 5204 GTGGCCGGTCACCCTCTCAGGCCGGCTACCCGTCGTCGCCTTGGTGAGCCATTACCTCAC 5263 Query 182 CAACTAGCTAAT 193 |||| |||| || Sbjct 5264 CAACAAGCTGAT 5275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071960657600