Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq2673 753 0.0 seq1792 365 2e-98 >seq2673 Length=9083 Score = 753 bits (834), Expect = 0.0 Identities = 528/599 (88%), Gaps = 12/599 (2%) Strand=Plus/Plus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||||| | |||||| |||||| ||||||||| || |||||||||||| |||||||||| Sbjct 2465 TCGACTATGAAGCTTA-TCCCCCACAGTCTCACTGCTGCGCTCTCACTTACCGGCATTCG 2523 Query 61 GAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGT-GCTCTACCTCC 119 |||||| | ||| || |||| ||||| || ||| | | ||||||||| ||||||||||| Sbjct 2524 GAGTTTAGCTGACGTCAGTAACCTTGTAGGGCCCATCGGCCATCCAGTAGCTCTACCTCC 2583 Query 120 GGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAG 179 || ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 2584 GGCAAGAAACACGCAACGCTGCACCTAAATGCATTTCGGAGAGAACCAGCTATCACGAAG 2643 Query 180 TTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGT 239 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 2644 TTTGATTGGCCTTTCACCCCTATCCACAGCTCATCCCCTCAGTTTTCAACCTAAGTGGGT 2703 Query 240 TCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTT 299 ||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||| Sbjct 2704 TCGGTCCTCCACGACGTCTTACCGTCGCTTCAACCTGGCCATGGATAGATCACTTCGCTT 2763 Query 300 CGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCC 359 ||||||| | | ||| ||| | |||||||||| ||||||||||||||||||||||||| Sbjct 2764 CGGGTCTAGGACATGCGACTGAATCGCCCTATTCAGACTCGCTTTCGCTACGGCTACCCC 2823 Query 360 ACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCC 419 ||||||||||||||||| ||| | ||| ||||||||||||||||||||||||||||||| Sbjct 2824 ACACGGGTTAACCTCGCCACATATCGCTAACTCGCAGGCTCATTCTTCAAAAGGCACGCT 2883 Query 420 GTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGT 479 ||||| ||||| |||| ||||| |||||||||| ||| | |||||||||| Sbjct 2884 GTCAC-----ACCTACAAGG-----GTGCTCCAACGGATTGTAAGCAAACGGTTTCAGGT 2933 Query 480 ACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTAT 539 ||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||| Sbjct 2934 ACTATTTCACTCCCCTCCCGGGGTACTTTTCACCTTTCCCTCACGGTACTAGTCCGCTAT 2993 Query 540 CGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTC 598 |||||| | |||||||||||||||| | |||||||| | |||||||||||| ||||| Sbjct 2994 CGGTCATCTGGGAGTATTTAGGCTTATCAGGTGGTCCTGACAGATTCACACGGGATTTC 3052 >seq1792 Length=5876 Score = 365 bits (404), Expect = 2e-98 Identities = 449/601 (75%), Gaps = 22/601 (4%) Strand=Plus/Plus Query 3 GACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCGGA 62 ||||||||| ||| | |||||||||| | ||| | | ||| || ||||||| Sbjct 4553 GACTACGGACGTTAG-CACCCGCAGTCTGTCTCCCG-GATAGTACTCATAGGTATTCGGA 4610 Query 63 GTTTGGTTGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCATCCAGTGCTCTACCTCCGG 121 ||||| | || |||||| | | | |||||||| | | |||||||||||| || Sbjct 4611 GTTTGCATCGGTTTGGTAAGTCGGGATGACCCCCTAGCCGAAACAGTGCTCTACCCCCT- 4669 Query 122 GAAGAAACACG--CGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAG 179 | | | || ||| || |||||||| ||||||||||||||||||||||| || Sbjct 4670 -ATGGTATTCGTCCGAGGCGCTACCTAAATAGCTTTCGGGGAGAACCAGCTATCACCGAG 4728 Query 180 TTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGT 239 ||||||| |||||||||||||||||||| |||||||||| |||||||| ||||||| Sbjct 4729 TTTGATTAGCCTTTCACCCCTATCCACAAGTCATCCCCTGGCTTTTCAACGACAGTGGGT 4788 Query 240 TCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTT 299 ||||||||||| || |||||| ||||||||||| |||||||||||||| | || Sbjct 4789 TCGGTCCTCCAGTTAGTGTTACCCAACCTTCAACCTGCTCATGGATAGATCACCCGGTTT 4848 Query 300 CGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCC 359 ||||||| | | || ||| | |||||||||| |||||| |||| |||||||| ||| Sbjct 4849 CGGGTCTATACCCAGCAACT-AAACGCCCTATTAAGACTCGATTTCTCTACGGCTCCCCT 4907 Query 360 ACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCC 419 | | ||||||||| || || || || |||| | | |||| | ||||||| |||| Sbjct 4908 ATGC-GGTTAACCTTGCTACTGAA-TATAAGTCGCTGACCCATTATACAAAAGGTACGCA 4965 Query 420 GTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGT 479 |||||| | || ||| || ||||| || | ||||| ||| ||||||||| Sbjct 4966 GTCACC--GAAC----AAG-----TCGGCTCCCACTGCTTGTATGCATGCGGTTTCAGGA 5014 Query 480 ACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTA 538 |||||||||||||| | ||||||| |||||| |||||||||||||||||| || | ||| Sbjct 5015 TCTATTTCACTCCCCTCACAGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTA 5074 Query 539 TCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTC 598 ||||||| |||||||||||| ||| || ||||||| ||| ||||| || | |||| Sbjct 5075 TCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAGGTTTC 5134 Query 599 A 599 | Sbjct 5135 A 5135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817533294080