Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq1792 518 8e-145 seq2673 230 6e-58 >seq1792 Length=5876 Score = 518 bits (574), Expect = 8e-145 Identities = 373/417 (89%), Gaps = 10/417 (2%) Strand=Plus/Plus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || ||||||| ||||| || || ||||| ||||| ||| ||||||||||||||||||| Sbjct 4747 CCTATCCACAAGTCATCCC-CTGGCTTTT-CAACGACAGTGGGTTCGGTCCTCCAGTTAG 4804 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||||||||||| |||||||| ||| ||||||||| |||||||| ||||||||| | Sbjct 4805 T-GTTACCCAACCTT-CAACCTGCTCAT-GGATAGATCACCCGGTTT-CGGGTCTATA-C 4859 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183 ||||| |||| |||||||| ||||||||| ||| | ||||| ||||||||| ||||||| Sbjct 4860 CCAGCAACTAAACGCCCTATTAAGACTCGATTT-CTCTACGGCTCCCCTATGCGGTTAAC 4918 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 ||| || |||||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 4919 CTT-GCTACTGAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCGAACAA 4977 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 || ||||||||||||||||| |||| |||||||||||||||||||||||||||| | || Sbjct 4978 -GTCGGCTCCCACTGCTTGTATGCATGCGGTTTCAGGATCTATTTCACTCCCCTCACAGG 5036 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 5037 GGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAG 5096 Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||||||||||||||||||||||||||||| ||||| ||||| || |||||||| Sbjct 5097 CCTTGGAGGATGGTCCCCCCATATTCAGACAAGGTTTCACGTGCCTCGCCCTACTCG 5153 >seq2673 Length=9083 Score = 230 bits (254), Expect = 6e-58 Identities = 312/418 (75%), Gaps = 13/418 (3%) Strand=Plus/Plus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| || || | |||| |||| ||| |||||||||||||| | Sbjct 2662 CCTATCCACAGCTCATCCC-CTCAGTTTT-CAACCTAAGTGGGTTCGGTCCTCCACGACG 2719 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||| ||| ||||||| |||| ||||||||| | | || |||||||| | Sbjct 2720 TC-TTACCGTCGCTT-CAACCTGGCCAT-GGATAGATCACTTCGCTT-CGGGTCTAGGAC 2775 Query 124 CCAGCGACTAGA-CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAA 182 |||||| | ||||||| | ||||||||||| ||||||| || ||| | ||| | | Sbjct 2776 AT-GCGACTGAATCGCCCTATTCAGACTCGCTTT-CGCTACGGCTACCCCACACGGGTTA 2833 Query 183 GCTTTGCCACTGAAAA-TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCAC-CCAA 240 | | ||||| | ||| |||| | | |||| | ||||||| |||| ||||| || | Sbjct 2834 ACCTCGCCACATATCGCTAACTCGCAGGCTCATTCTTCAAAAGGCACGCTGTCACACCTA 2893 Query 241 CAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTC 300 ||| | | ||||| || | ||||| ||| ||||||||||| |||||||||||||||| | Sbjct 2894 CAAGG-GTGCTCCAACGGATTGTAAGCAAACGGTTTCAGGTACTATTTCACTCCCCTC-C 2951 Query 301 CGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATT 360 |||||| |||||| ||||||||||||||||||||| | |||||||||| | |||||| Sbjct 2952 CGGGGTACTTTTCACCTTTCCCTCACGGTACTAGTCCGCTATCGGTCATCTGGGAGTATT 3011 Query 361 TAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 ||| ||| | |||||| || ||||| || ||||||| || |||| ||||| Sbjct 3012 TAGGCTTATCAGGTGGTCCTGACAGATTCACACGGGATTTCTCGGGCCCCGTGCTACT 3069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241554433280