Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq2673 269 5e-70 seq989 215 1e-53 >seq2673 Length=9083 Score = 269 bits (298), Expect = 5e-70 Identities = 258/326 (79%), Gaps = 6/326 (2%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||||| ||||||||||| || | ||||||||||||||| ||||||||||||||||||||| Sbjct 5117 GGCGTTGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 5176 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||||| ||| |||||||| ||||||||| | Sbjct 5177 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGGTCACCCTCTCAGGCCGGCTACCCGT 5236 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| ||||||| || |||| ||||||||| | || || ||||||||| ||||| | Sbjct 5237 CGTCGCCTTGGTGAGCCATTACCTCACCAACAAGCTGATAGGCCGCGAGTCCATCCCGAA 5296 Query 181 GCGATAAATCTTTGGTCAAAGA-ATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 |||||||||||| | | | | |||| | | |||| ||| | ||||||| Sbjct 5297 CCGATAAATCTTTCCACCCACACACCATGCGGTGATGGGACA-TATCCAGTATTAGACGC 5355 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| |||| ||| | |||||||| |||||||||||||||||||| || Sbjct 5356 CGTTTCCAGCGCTTATCCCAGAGTTCGGGGCAGGTTACTCACGTGTTACTCACCCGTTCG 5415 Query 300 CCACTAAGCTATATATCCAGCAAGCT 325 ||||| || | | |||||||||| Sbjct 5416 CCACT---CT-TCCACCCAGCAAGCT 5437 >seq989 Length=5214 Score = 215 bits (238), Expect = 1e-53 Identities = 236/313 (75%), Gaps = 17/313 (5%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| ||||||||| |||||||||| |||||| ||||||||||||||||||||| Sbjct 1502 GGCATGGCTGGATCAGGGTTCCCCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 1561 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || ||||| ||| Sbjct 1562 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCGGATCATCCTCTCAGACCCGCTACAGAT 1621 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| |||||| ||| ||| | ||||||||| |||||| | | || ||||| | | Sbjct 1622 CGTCGCCTTGGTAGGCCTTTACCCCACCAACTAGCTAATCCGACTTAGGCTCATCTATTA 1681 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCT--------GACATTATGCGGTAT 232 || | ||||| | | |||| || | || | | |||||||||| Sbjct 1682 ACGCAA-------GGTCACA-AGTGATCCCCTGCTTTCCCCCGTAGGGCGTATGCGGTAT 1733 Query 233 TAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCAC 292 |||| | | |||| | | ||| | || | | | |||||| || || | || |||||||| Sbjct 1734 TAGCATCCCTTTCGAGATGTTGTCCCCCATTAATAGGCAGATTCCT-AAGTATTACTCAC 1792 Query 293 CCGTCCGCCACTA 305 ||||||||| ||| Sbjct 1793 CCGTCCGCCGCTA 1805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998363358720