Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq2673 372 7e-101 seq1792 212 1e-52 >seq2673 Length=9083 Score = 372 bits (412), Expect = 7e-101 Identities = 337/429 (79%), Gaps = 30/429 (7%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||||||||||||||||||||||| ||||||| |||||||||||| | ||||||| Sbjct 2040 CGACTACGCCTGTCGGCCTCGCCTTAGGTCCCGACTTACCCAGGGCAGATTAGCTTGACC 2099 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 ||||||||||||| ||| ||||||| ||| |||||||| ||||||||||||||| Sbjct 2100 CTGGAACCCTTGGTCTTCCGGAGGACGGGTTTCTCACCCGTCTTTCGCTACTCATGCCTG 2159 Query 121 CATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGAC 180 |||||||||||| | ||||| || |||| | || ||||||| ||||||| Sbjct 2160 CATTCTCACTCGTGTGGCATCCACGACTGGATCACTCCGCCGCTTCACTCGCCACACGAC 2219 Query 181 GCTCCCCTACCCAACCACACAGGT----------------------------TGCCACAG 212 |||| |||||||| ||| || | | ||||||| Sbjct 2220 GCTCTCCTACCCATCCATACGGCTGAACCACGAAGGCTTGCCTCAGTACGAATGCCACAA 2279 Query 213 CTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGC 272 |||||| || ||| ||||||| |||||| |||||||||||||||||||||||||||| Sbjct 2280 CTTCGGTGGCGTGCTTGAGCCCCGTTACATTGTCGGCGCGGAATCACTTGACCAGTGAGC 2339 Query 273 TATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAAC 332 |||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| Sbjct 2340 TATTACGCACTCTTTCAAGGGTGGCTGCTTCTAAGCCAACCTCCTGGTTGTCACAGCAAC 2399 Query 333 TCCACATCCTTTCCCACTGAGTCAC-CACTTAGGGGCCTTAGCTGATGATCTGGGCTGTT 391 |||||||||||| ||||| || ||| | ||| ||| |||||| || ||||||||| |||| Sbjct 2400 TCCACATCCTTTTCCACTTAG-CACGCGCTTTGGGACCTTAGTTGGTGATCTGGGTTGTT 2458 Query 392 TCCCTCTCG 400 ||||||||| Sbjct 2459 TCCCTCTCG 2467 >seq1792 Length=5876 Score = 212 bits (234), Expect = 1e-52 Identities = 295/405 (73%), Gaps = 9/405 (2%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| |||||||||||| | || ||| | Sbjct 4149 CGACTACGCCTCTCGGCCTCGCCTTAGGGGTCGACTCACCCAGCCCCGATTAACGTTGGA 4208 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||||||| || ||| ||||| || ||||||| || |||||| | | Sbjct 4209 CTGGAACCCTTGGTCTTTCAGCGAACGGGTTTTTCACCCGTTTTGTCGTTACTCACGTCA 4268 Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177 |||||| |||| | || | ||||| || || || | || ||||| | || ||| Sbjct 4269 GCATTCGCACTTCTGAT-ACCTCCAGCATACT-TCTCAATACACCTTCATCGGCTTACAG 4326 Query 178 GACGCTCCCCTACC-CAACCACACAGGTTGC---CACAGCTTCGGCGGATAACTTAAGCC 233 ||||||||||||| | ||| || | | | |||||||||| ||| || |||| Sbjct 4327 AACGCTCCCCTACCACGTATACATAGTATACATCCGCAGCTTCGGCATATAGTTTTAGCC 4386 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 ||| ||||| || |||| | ||| ||| ||||||||||||||| ||||| |||| Sbjct 4387 CCGTTACATCTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAGGG 4446 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 |||||||||| ||||||||||||| | |||||| || ||||||| ||||||||| | Sbjct 4447 TGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTATGCCTTCCCACATCGTTTCCCACTTAA 4506 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 | | || ||||||||||||| | ||||| ||||| ||||| Sbjct 4507 CTATAATTTGGGGGCCTTAGCTGGCGGTCTGGATTGTTTTCCTCT 4551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177556782080