Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq989 150 1e-34 seq2673 143 2e-32 >seq989 Length=5214 Score = 150 bits (166), Expect = 1e-34 Identities = 130/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| |||||||||||||||| |||| || ||||||| || |||| Sbjct 578 TCGAGTTGCAGACTCCAATCCGGACTACGATCGGCTTTTTGAGATTAGCATCCTATCGCT 637 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || |||| |||| ||||||||| ||||||| |||||| | ||||||||| Sbjct 638 AGGTAGCAACCCTTTGTACCGACCATTGTAGCACGTGTGTAGCCCTGGTCGTAAGGGCCA 697 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||||||||||| ||||| ||||||||| ||||||||| Sbjct 698 TGATGACTTGACGTCGTCCCCGCCTTCCTCCAGTTTGTCAC 738 >seq2673 Length=9083 Score = 143 bits (158), Expect = 2e-32 Identities = 123/152 (81%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 ||||||||||||| ||||||| ||| || ||||| ||||||| ||||| ||||||| Sbjct 4212 TCGAGTTGCAGACCCCAATCCGAACTGAGACCGACTTTTTGGGATTCGCTCCACCTCGCG 4271 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || ||||| ||||| |||||||| | | ||||||||| | |||||||| || Sbjct 4272 GTATCGCAGCCCTTTGTATCGGCCATTGTAGCATGCGTGAAGCCCAAGACATAAGGGGCA 4331 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCG 152 ||| || ||||||||||||||||||||||||| Sbjct 4332 TGATGATTTGACGTCATCCCCACCTTCCTCCG 4363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415985209900