Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq1792 136 3e-30 seq2673 71.6 1e-10 >seq1792 Length=5876 Score = 136 bits (150), Expect = 3e-30 Identities = 115/141 (82%), Gaps = 8/141 (6%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||| ||||| Sbjct 3088 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTA 3147 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| | |||||| | |||| | ||||||| | |||| | |||||||| || ||| Sbjct 3148 CTTTCGTACCTGCTCGACTTGTGGGTCTCGCAGTTAAGCGCGCTTTTGCCTTTATACT-- 3205 Query 121 CACTAC----GATTTCCGACC 137 |||| ||||||||||| Sbjct 3206 --CTACGCGTGATTTCCGACC 3224 >seq2673 Length=9083 Score = 71.6 bits (78), Expect = 1e-10 Identities = 90/121 (74%), Gaps = 6/121 (5%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCA---CCGGATCACTATGAC 57 ||||||||||||||||||||| || |||||| || ||||| ||||||||||| | Sbjct 882 TACCTTTTATCCGTTGAGCGACAGCGCTTCCA--CA-AGCCACTGCCGGATCACTAGTCC 938 Query 58 CTGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117 | |||||| |||||| | ||| |||| || |||||| | ||| ||| || ||| Sbjct 939 CGACTTTCGTCCCTGCTCGACCTGTCAGTCTCACAGTCAAGCTCCCTTGTGCACTTACAC 998 Query 118 T 118 | Sbjct 999 T 999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351987889000