Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq2673 334 1e-89 seq1792 309 5e-82 >seq2673 Length=9083 Score = 334 bits (370), Expect = 1e-89 Identities = 239/275 (87%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 1 CGAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCA 60 ||||| |||||| |||||||||| |||||| |||||| | || ||| |||| ||| Sbjct 546 CGAGGCCGGCTTCCCGCTTAGATGCTTTCAGCGGTTATCCATCCCGAACGTAGCCAACCA 605 Query 61 GCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 || |||| |||||||| |||||||| ||||||||||| ||||| ||||||||||||||| Sbjct 606 GCCATGCCCTTGGCAGAACAACTGGCACACCAGAGGTTCGTCCAACCCGGTCCTCTCGTA 665 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||| || ||| ||||||||||||||| |||| | | |||||||||||||||||||||| Sbjct 666 CTAGGGTCAGATCCTCTCAAATTTCCAACGCGCGCAGCGGATAGGGACCGAACTGTCTCA 725 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 ||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 726 CGACGTTCTAAACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 785 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | ||| ||||||||||||| ||||||||||||||| Sbjct 786 CAACTCCAGCCCCAGGATGCGACGAGCCGACATCG 820 >seq1792 Length=5876 Score = 309 bits (342), Expect = 5e-82 Identities = 233/274 (85%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| |||||| |||||||||| |||||| ||||||||||| ||| ||||| ||| | Sbjct 2753 GAGGTAGGCTTCCCGCTTAGATGCTTTCAGCGGTTATCCCTTCCGAACATAGCTACCCGG 2812 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | |||| |||| ||||| ||| ||||||||||| ||||| | ||||||||||||| Sbjct 2813 CGATGCGACTGGCGTCACAACCGGTACACCAGAGGTTCGTCCACTCTGGTCCTCTCGTAC 2872 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || | ||| ||||||||||||||| ||||||||| |||||||||||||||||||| | Sbjct 2873 TAGGAGCAGATCCTCTCAAATTTCCAACGCCCACGGTAGATAGGGACCGAACTGTCTCAC 2932 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||| |||||||||||||| ||||||||| ||||||||||| |||||||||||| Sbjct 2933 GACGTTCTAAACCCAGCTCGCGTACCTCTTTAAATGGCGAACAGCCATACCCTTGGGACC 2992 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | ||||||||||||||||||| |||||||||||| Sbjct 2993 TGCTTCAGCCCCAGGATGAGATGAGCCGACATCG 3026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780772240120