Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq989 345 1e-92 seq2673 268 2e-69 >seq989 Length=5214 Score = 345 bits (382), Expect = 1e-92 Identities = 331/419 (79%), Gaps = 14/419 (3%) Strand=Plus/Plus Query 1 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCC 60 || |||||||||| ||||||||||||| |||||||||||||||| |||||| || | || Sbjct 1467 GTGCTTTACAACCATAAGGCCTTCTTCACACACGCGGCATGGCTGGATCAGGGTTCCCCC 1526 Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120 |||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 1527 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCA 1586 Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCC 180 ||||||| | ||||||||||||||| |||| ||||||||||| ||| |||| ||||||| Sbjct 1587 GTGTGGCGGATCATCCTCTCAGACCCGCTACAGATCGTCGCCTTGGTAGGCCTTTACCCC 1646 Query 181 GCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAA--GGTCCCCCT 238 ||||||||||||||| | | || ||||| || | ||| | || | ||||| Sbjct 1647 ACCAACTAGCTAATCCGACTTAGGCTCATCTATTAACGCAAGGTCACAAGTGATCCCCTG 1706 Query 239 CTTT-GGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCA 297 |||| | | | || |||||||||||||| || |||| || ||| |||||| | Sbjct 1707 CTTTCCCCCGTAGGGCG-TATGCGGTATTAGCATCCCTTTCGAGATGTTGTCCCCCATTA 1765 Query 298 TCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACT-CGTCAGCGA-AGCAGCAAGC 355 |||||| |||| | |||||||||||||||||| || |||| | | ||||| | Sbjct 1766 ATAGGCAGATTCCTAAGTATTACTCACCCGTCCGCCGCTAGGTCAATTACCGAAGCAATC 1825 Query 356 TGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | | ||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1826 TCC--------CCCGCTCGACTTGCATGTGTTAAGCCTGCCGCCAGCGTTCAATCTGAG 1876 >seq2673 Length=9083 Score = 268 bits (296), Expect = 2e-69 Identities = 312/416 (75%), Gaps = 15/416 (4%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||||||||||||| || || |||||||| | ||||||||||||||||||||||| Sbjct 5086 TTTACAACCCGAAGGCCGTCATCCCTCACGCGGCGTTGCTGCATCAGGCTTGCGCCCATT 5145 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 5146 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 5205 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||| ||||| |||||||| || |||| ||||||||| |||| ||||||||| | ||| Sbjct 5206 GGCCGGTCACCCTCTCAGGCCGGCTACCCGTCGTCGCCTTGGTGAGCCATTACCTCACCA 5265 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCC---CGAAGGTCCCCCTCTT 241 || |||| || | || ||||| | || | | | | | | | | Sbjct 5266 ACAAGCTGATAGGCCGCGAGTCCATCCCGAACCGATAAATCTTTCCACCCACACACCATG 5325 Query 242 TGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAG 301 ||| || ||| ||| | ||||||| | |||||||||| | ||||||| | Sbjct 5326 CGGTGATGGGAC-ATATCCAGTATTAGACGCCGTTTCCAGCGCTTATCCCAGAGTTCGGG 5384 Query 302 GCA-GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCT--GC 358 ||| ||| | || |||||||||||| |||||||| | | | ||||||||| || Sbjct 5385 GCAGGTTACTCACGTGTTACTCACCCGTTCGCCACTCTT---CCACCCAGCAAGCTGGGC 5441 Query 359 TTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||| | |||||||||||||||||||| || ||||||||||||| ||||| Sbjct 5442 TTC-----ATCGTTCGACTTGCATGTGTTAAGCACGCCGCCAGCGTTCGTCCTGAG 5492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222355137920