Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq2673 414 3e-113 seq989 293 7e-77 >seq2673 Length=9083 Score = 414 bits (458), Expect = 3e-113 Identities = 382/480 (80%), Gaps = 8/480 (2%) Strand=Plus/Minus Query 19 GAAGAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACAT 78 |||||| |||| ||||||||||||| |||| ||||||||||| | || | |||||| Sbjct 5424 GAAGAGTGGCGAACGGGTGAGTAACACGTGAGTAACCTGCCCCGAACTCTGGGATAAGCG 5365 Query 79 ACCGAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATC-AAAG 137 |||| | ||||||| |||| | | | | | |||||||| | | |||| Sbjct 5364 CTGGAAACGGCGTCTAATACTGGATA-TGTCCCATCACCGCATGGTGTGTGGGTGGAAAG 5306 Query 138 CTCCGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACC 197 | |||| | |||| ||| |||| | || |||| |||||| |||||| |||| ||| Sbjct 5305 ATTTATCGGTTCGGGATGGACTCGCGGCCTATCAGCTTGTTGGTGAGGTAATGGCTCACC 5246 Query 198 AAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGG 257 |||||||||| ||||||| ||||||||||||| |||||||| ||| |||||||||||| Sbjct 5245 AAGGCGACGACGGGTAGCCGGCCTGAGAGGGTGACCGGCCACACTGGGACTGAGACACGG 5186 Query 258 TCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGC 317 ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 5185 CCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGC 5126 Query 318 AGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAA--- 374 |||||||||||||||| ||||| ||||||||||| ||||| |||| | | |||| Sbjct 5125 AGCAACGCCGCGTGAGGGATGACGGCCTTCGGGTTGTAAACCTCTTTTAGTAGGGAAGAA 5066 Query 375 --GATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTA 432 || | ||||||||| || || |||| |||||||||||||||||||||||||||||| Sbjct 5065 GCGAAAGTGACGGTACCTGCAGAAAAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTA 5006 Query 433 ATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTT 492 |||||||||| || |||||| |||||||||| | |||||||||| | |||||| || || Sbjct 5005 ATACGTAGGGTGCAAGCGTTGTCCGGAATTA-TTGGGCGTAAAGAGCTCGTAGGCGGCTT 4947 >seq989 Length=5214 Score = 293 bits (324), Expect = 7e-77 Identities = 281/364 (77%), Gaps = 27/364 (7%) Strand=Plus/Minus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222 ||| ||||||||||||||| ||||| ||| |||||||||||||||| ||||| | ||| Sbjct 1665 GTCGGATTAGCTAGTTGGTGGGGTAAAGGCCTACCAAGGCGACGATCTGTAGCGGGTCTG 1606 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282 ||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||||| Sbjct 1605 AGAGGATGATCCGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAG 1546 Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342 |||||||||||| |||||||| || |||||| |||| | |||||||| | || ||||| Sbjct 1545 TGGGGAATATTGGACAATGGGGGGAACCCTGATCCAGCCATGCCGCGTGTGTGAAGAAGG 1486 Query 343 CCTTCGGGTCGTAAAGCTCTGTCCTCAAGGA------------AGATAAT---------- 380 |||| ||| ||||||| || | | |||| || |||| Sbjct 1485 CCTTATGGTTGTAAAGCACTTTAAGCGAGGAGGAGGCTCCTGTAGTTAATACCTACAGAG 1426 Query 381 ----GACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC 436 |||| |||| | || |||| |||||||||| |||||||||||||||||||||| Sbjct 1425 AGTGGACGTTACTCGCAGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATAC 1366 Query 437 GTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTA 496 |||| || ||||||| |||| ||||| |||||||||| ||||||||| || || ||| Sbjct 1365 AGAGGGTGCGAGCGTTAATCGGATTTACT-GGGCGTAAAGCGTGCGTAGGCGGCTTTTTA 1307 Query 497 AGTC 500 |||| Sbjct 1306 AGTC 1303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497545038080