Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq2673 343 4e-92 seq989 336 5e-90 >seq2673 Length=9083 Score = 343 bits (380), Expect = 4e-92 Identities = 315/397 (79%), Gaps = 1/397 (0%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||||||||||||||||||||||||||||||||| || |||||| |||| Sbjct 5040 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTGTCCG 4981 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||||| ||||||||||| | |||||| || || | ||| | |||||| | || Sbjct 4980 GAATTATTGGGCGTAAAGAGCTCGTAGGCGGCTTGTCGCGTCTGCTGTGAAAACCCGAGG 4921 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 ||||||| |||| |||| | | || | |||||||||| | ||||| | |||||| Sbjct 4920 CTCAACCTCGGGCCTGCAGTGGGTACGGGCAAGCTAGAGTGCGGTAGGGGAGATTGGAAT 4861 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 |||| ||||||||||| |||||| |||||| |||||||||||| |||||||||| | | Sbjct 4860 TCCTGGTGTAGCGGTGGAATGCGCAGATATCAGGAGGAACACCGATGGCGAAGGCAGATC 4801 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 |||| | ||||||||| |||||| ||||||| |||||||| ||||||||||||||||| Sbjct 4800 TCTGGGCCGTAACTGACGCTGAGGAGCGAAAGCATGGGGAGCGAACAGGATTAGATACCC 4741 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGC-GCATAAGTGCTCCGGTG 371 |||||||||| |||||||||| || ||||| ||| ||| | | | | | | ||| Sbjct 4740 TGGTAGTCCATGCCGTAAACGTTGGGAACTAGATGTAGGGACTGTTCCACGGTTTCTGTG 4681 Query 372 CCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 || ||| |||||| ||||| || ||||||||||| Sbjct 4680 TCGTAGCTAACGCATTAAGTTCCCCGCCTGGGGAGTA 4644 >seq989 Length=5214 Score = 336 bits (372), Expect = 5e-90 Identities = 313/396 (79%), Gaps = 1/396 (0%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||| |||||||||||||||||||||| |||| || ||||||| || Sbjct 1404 AAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCGAGCGTTAATCG 1345 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 || ||||||||||||||| ||||||||| || || ||||||| || |||||| | | Sbjct 1344 GATTTACTGGGCGTAAAGCGTGCGTAGGCGGCTTTTTAAGTCGGATGTGAAATCCCCGAG 1285 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 || ||| || | ||| || || |||| |||||||| |||| || || |||| Sbjct 1284 CTTAACTTGGGAATTGCATTCGATACTGGGAAGCTAGAGTATGGGAGAGGATGGTAGAAT 1225 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 ||| |||||||||||||||||||||| || ||||||| ||| |||||||||| || Sbjct 1224 TCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAATACCGATGGCGAAGGCAGCCA 1165 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 |||| || |||||| |||||| ||||||| |||||||||||||||||||||||||| Sbjct 1164 TCTGGCCTAATACTGACGCTGAGGTACGAAAGCATGGGGAGCAAACAGGATTAGATACCC 1105 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGC 372 |||||||||| ||||||||||||| |||||| || ||||| | || ||| ||| Sbjct 1104 TGGTAGTCCATGCCGTAAACGATGTCTACTAGCCGTTGGGGCCTTTGAG-GCTTTAGTGG 1046 Query 373 CGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 |||||| ||||| ||||||| || ||||||||||| Sbjct 1045 CGCAGCTAACGCGATAAGTAGACCGCCTGGGGAGTA 1010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203155842560