Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq3601 100 5e-19 seq3626 80.6 5e-13 >seq3601 Length=431864 Score = 100 bits (110), Expect = 5e-19 Identities = 124/165 (75%), Gaps = 6/165 (4%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 || ||||||| | |||||||||||||||||| | ||| ||||||| | ||||||| | Sbjct 337495 GCGATAACAGTT-TGTGATGCCCTTAGATGTCCGGGGATGCACGCGTGTTACACTGGTGG 337437 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCG-T 232 || || || ||| || | |||| ||||| | ||||| | | ||| ||| ||| | Sbjct 337436 AGTCAGCGGGTTTTTC---TATGCCGAAAGGTATCGGTAAACCGTTGAAATTCT-TCGAT 337381 Query 233 GCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGC 277 | ||||||| | |||| ||||||||| ||| |||||||||||| Sbjct 337380 GTCCGGGATAGGGTATTGTAATTATTGCCCTTAAACGAGGAATGC 337336 >seq3626 Length=653264 Score = 80.6 bits (88), Expect = 5e-13 Identities = 89/115 (77%), Gaps = 3/115 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||| | ||| | ||||| || | ||||| | |||||||||||||| Sbjct 343569 CTTCTTAGAGGGATAAGCGGTGTTTAGCCGCACGA-GATTGAG-CGATAACAGGTCTGTG 343626 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 |||||||||||||| | |||| ||||| ||||||||| ||| || || ||| Sbjct 343627 ATGCCCTTAGATGTCCGGGGCTTCACGCATGCTACACTGGTGGAGTCAGCGGGTT 343681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947165237760