Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1792 410 4e-112 seq2673 251 2e-64 >seq1792 Length=5876 Score = 410 bits (454), Expect = 4e-112 Identities = 385/483 (80%), Gaps = 8/483 (2%) Strand=Plus/Minus Query 1 TCGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 ||||||| || |||||| ||| ||||||| ||||||||||||| |||||||| ||| Sbjct 4889 TCGAGTCTTAATAGGGCGTTTAGTTGCTGGGTATAGACCCGAAACCGGGTGATCTATCCA 4830 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 || |||| ||||||| |||||||| ||||||| ||||||||||| |||||||| Sbjct 4829 TGAGCAGGTTGAAGGTTGGGTAACACTAACTGGAGGACCGAACCCACTGTCGTTGAAAAG 4770 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 ||||||||| ||||| ||||||||||||||||| |||||| || |||||||||||| Sbjct 4769 CCAGGGGATGACTTGTGGATAGGGGTGAAAGGCTAATCAAACTCGGTGATAGCTGGTTCT 4710 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTC--AAGTATCACCATCGGGGGTAGAGCACTGTTA 237 | |||||| |||||||||||| ||||| | | || ||||| ||||||||||||||||| Sbjct 4709 CCCCGAAAGCTATTTAGGTAGCGCCTCGGACGAAT-ACCATAGGGGGTAGAGCACTGTTT 4651 Query 238 TGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTT 297 |||||||||||||| |||||||||||||| |||||||||||||| | || ||| | Sbjct 4650 CGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATACCTATGAGTACT 4591 Query 298 ACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 | | |||||| || ||||||||| |||||| | |||||| || ||||| ||| Sbjct 4590 ATC-CGGGAGACAGACTGCGGGTGCTAACGTCCGTAGTCAAGAGGAAAACAATCCAGACC 4532 Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417 ||||||||||||| |||| | || ||||| | ||||| || || || ||||| Sbjct 4531 GCCAGCTAAGGCCCCCAAATTATAGTTAAGTGGGA--AACGATGTGGGAAGGCATAGACA 4474 Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 ||||||| |||||||| |||||||||| | |||||||| |||||| |||||||||||| Sbjct 4473 GCTAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACTAGTC 4415 Query 478 GAG 480 ||| Sbjct 4414 GAG 4412 >seq2673 Length=9083 Score = 251 bits (278), Expect = 2e-64 Identities = 352/484 (73%), Gaps = 10/484 (2%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGA--CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| ||| ||||||| ||||||| | |||||||||| | |||||||||| ||| Sbjct 2804 CGAGTCTGAATAGGGCGATTCAGTCGCATGTCCTAGACCCGAAGCGAAGTGATCTATCCA 2745 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 |||||||| ||||| |||||| ||| | |||||| ||||||||||| | |||||||| Sbjct 2744 TGGCCAGGTTGAAGCGACGGTAAGACGTCGTGGAGGACCGAACCCACTTAGGTTGAAAAC 2685 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | |||||||||||||||| |||||||||||||| || ||||||| | |||||||||||| Sbjct 2684 TGAGGGGATGAGCTGTGGATAGGGGTGAAAGGCCAATCAAACTTCGTGATAGCTGGTTCT 2625 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC-CATCGGGGGTAGAGC-ACTGTTA 237 |||||||| |||||||| || | || | | ||| |||||||| |||| | Sbjct 2624 CTCCGAAATGCATTTAGGTGCAGCGTTGCGTGTTTCTTGCCGGAGGTAGAGCTACTG-GA 2566 Query 238 TGGCTAGGGGGTCATTGCGACTTACCAAACCATTGC-AAACTCCGAATGCGCATCAGTTT 296 |||| | || | | | | | | || || ||||||||||||| | ||| Sbjct 2565 TGGC-CGATGGGCCCTACAAGGTTACTGACGTCAGCTAAACTCCGAATGCCGGTAAGTGA 2507 Query 297 TACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGAC 356 | ||| | |||||| |||| | |||| | | | ||||||| || || || || Sbjct 2506 GAGCGCAGCAGTGAGACTGTGGGGGATAAGCTTCATAGTCGAGAGGGAAACAACCCAGAT 2447 Query 357 TATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGAC 416 | || |||||| ||| || | ||||||| || || || || ||||| ||| Sbjct 2446 CACCAACTAAGGTCCCAAAGCGCGTGCTAAGTGGAA--AAGGATGTGGAGTTGCTGTGAC 2389 Query 417 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 476 | | |||| |||||||| |||||||||| | || ||||||||||||| |||||||| || Sbjct 2388 AACCAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGCTCACTGGT 2330 Query 477 CGAG 480 | || Sbjct 2329 CAAG 2326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689537991680