Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq1792 230 4e-58 seq2673 140 6e-31 >seq1792 Length=5876 Score = 230 bits (254), Expect = 4e-58 Identities = 248/325 (76%), Gaps = 9/325 (3%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 |||||| |||||||||||||||| | | |||||||||| |||||| |||| ||||||| Sbjct 5500 AGTGCATGTGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTAATAGCCTGCGATA 5441 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC--- 117 |||| ||||||| ||||| | || ||||||| ||||||| |||||||||||||| Sbjct 5440 AGCTTCGGGGAGGCGGCAAATATCCTGTGATCCGGAGATTTCTGAATGGGGAAACCCACT 5381 Query 118 GGCCCTTTGG--GTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACT 175 || | || | || ||||| ||||||||||| |||| | ||||||| || ||| | Sbjct 5380 TACCATAAGGTAGGTATCGCATGATGAATACATAGTCATGCGAGGCGAACGAGGGGAAGT 5321 Query 176 GAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGC 235 ||||||||| |||| | ||||||||||||||| ||||||||| ||||| ||||||| Sbjct 5320 GAAACATCTCAGTACCCTTAGGAAAAGAAATCAATTGAGATTCCCTCAGTAGCGGCGAGC 5261 Query 236 GAAATGGGATGAG-CCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGG 294 ||| ||||| || || ||| | ||| || | ||| |||| |||||| || | Sbjct 5260 GAACGGGGATCAGCCCATTAAGTTATATGTG---TTTTAGCGGAAAGCTCTGGGAAGTGC 5204 Query 295 AGCCATAGCGGGTGATAGCCCCGTA 319 || ||| ||||||||| |||||| Sbjct 5203 TACCGTAGAGGGTGATAGTCCCGTA 5179 >seq2673 Length=9083 Score = 140 bits (154), Expect = 6e-31 Identities = 192/265 (72%), Gaps = 14/265 (5%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| | ||||||||||||||| | || ||| ||||||||| ||| ||||||| Sbjct 3513 AGAGCAAACGGTGGATGCCTTGGCATCTGGAGCCGAAGAAGGACGTCGTAATCTGCGATA 3454 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC--- 117 ||| |||||||| |||| || ||||||| ||||||||||||||||||||| Sbjct 3453 AGCCTCGGGGAGTTGATAAACGAGCTATGATCCGAGGATTTCCGAATGGGGAAACCCCGC 3394 Query 118 ---GGCCCTT---TG---GGTCATTGCATGCTGAATACATA-GGTATGCAAAGCGAACGC 167 ||| | | || ||| | | | ||||||| ||| || | | || ||||| Sbjct 3393 CAGGGCGCGTGCGTGCCTGGTGACTCCCGCCTGAATATATAGGGCGGGTAGAGGGAACGT 3334 Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAAC-CGAGATTCCCAAAGTA 226 || ||| |||||||||| |||| | |||||| ||||| |||| | |||||| |||| Sbjct 3333 GGGGAAGTGAAACATCTCAGTACCCACAGGAAGAGAAAACAACATGTGATTCCGGGAGTA 3274 Query 227 GTGGCGAGCGAAATGGGATGAGCCT 251 ||||||||||||| ||| ||| || Sbjct 3273 GTGGCGAGCGAAACCGGAAGAGGCT 3249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918366294720