Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq3217 316 7e-84 seq3264 246 1e-62 seq3369 102 3e-19 >seq3217 Length=20983 Score = 316 bits (350), Expect = 7e-84 Identities = 284/350 (81%), Gaps = 6/350 (2%) Strand=Plus/Minus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGGCTCCCACTTA 246 ||| |||| | |||| | || |||||| |||||| | ||||| | ||||||| || Sbjct 10143 TAATTAAAGAGTCGATGAAAGTGGTGGTAATTCACTGTCTACCGAA--GTCTCCCACCTA 10086 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 | |||| ||||||| | | ||||||| ||| || |||||||||||||||||||||||| Sbjct 10085 TGCTACGCCTCTCATGACTCTTCACAATGTCAAACCAGAGTCAAGCTCAACAGGGTCTTC 10026 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 ||| |||||| || ||||||||||||| ||||||||||||||| ||| ||||||| || Sbjct 10025 TTTACCCGCTACTTTAGCCAAGCCCGTTCTCTTGGCTGTGGTTTCACTAAATAGTAGTTA 9966 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||| ||||||||||| ||||||||||||||| || |||| ||||||| || || Sbjct 9965 GGGACAGTACGAATCTCGTTATTCCATTCATGCGCGTGAC-AATTTAATGACGATGCCTT 9907 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 ||||||||||||||||||||||||| ||||||| |||||||||||||| | |||| | Sbjct 9906 TGGCTACCTTAAGAGAGTCATAGTTTCTCCCGCAGTTTACCCGCGCTTACTCTAATTAAT 9847 Query 487 TCACTTTGACATTCAGAGCACT-GGGCAGAAATCACATTGCGTCAACATC 535 | | |||||||||||||| |||||| |||||| | |||||| || Sbjct 9846 ACGAGCTAACATTCAGAGCACTGGGGCAG-AATCACTGTAAGTCAACTTC 9798 >seq3264 Length=24601 Score = 246 bits (272), Expect = 1e-62 Identities = 274/359 (76%), Gaps = 14/359 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| |||| || ||| |||| | ||||||||||||| ||||| | Sbjct 18602 CTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTACGTTACG 18543 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| | |||||| ||||||||| |||||||||| | ||||| |||| || | | || Sbjct 18542 ATTTGATAGATGTACCGCCCCAGTCAAACTCCCCGCTTGACACTGTCTTCGAGGAGAGTC 18483 Query 127 G----GCCCGCGAAGGAC----CTTAACGCCA-GAAAATGGTCGGTGAAGACCAGTTCCG 177 ||| || | | ||||| || ||||| | | |||||| ||| ||| Sbjct 18482 ACGGTGCCATAAAATGGCTCCGCTTAATGCTTCGAAAAAAGGCCGTGAAG-CCAATTCTC 18424 Query 178 CTTCATT-GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACG 235 |||| || |||||||| | |||| | || ||||||||||||| || ||||| | Sbjct 18423 TTTCAACCGAATAAGTAAAGAGTCGATGAAAGTGGTGGTATTTCACTGTCGACCGAA--G 18366 Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 ||||||| ||| |||||||||||| | | ||||||| ||| |||||||||||||||| Sbjct 18365 TCTCCCACCTATGCTACACCTCTCATGACTCTTCACAATGTCAAACTAGAGTCAAGCTCA 18306 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 ||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 18305 ACAGGGTCTTCTTTCCCCGCTATTTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 18247 >seq3369 Length=59888 Score = 102 bits (112), Expect = 3e-19 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||| ||| ||| |||| || ||| ||||| | ||||||||||||| ||||| | Sbjct 13284 CTTTTGCTGTACGAGAGGTTTCCGTCCTCTATGAGCTCGCCTTAGGACACCTACGTTACG 13343 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 ||| | |||||| ||||||||| |||||||||| | ||||| ||| Sbjct 13344 ATTTGATAGATGTACCGCCCCAGTCAAACTCCCCGCTTGACACTGT 13389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635139988160