Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq2673 690 0.0 seq1792 338 2e-90 >seq2673 Length=9083 Score = 690 bits (764), Expect = 0.0 Identities = 493/563 (88%), Gaps = 9/563 (2%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| ||| |||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 955 TCGACCTGTCAGTCTCACAGTCAAGCTCCCTTGTGCACTTACACTCGCCACCTGATTGCC 1014 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 1015 AACCAGGTTGAGGGAACCTTTGGGCGCCTCCGTTACTTTTTGGGAGG-CAACCGCCCCAG 1073 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 |||||||||||||||||||||||||| | || ||||| || || |||||||||||| Sbjct 1074 TTAAACTACCCACCAGGCACTGTCCCAAGACCCGATCAGGGTCCGTAGTTAGATATCCAG 1133 Query 181 TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGT 240 | | ||||||||||||||||||| |||||||| | |||| ||||| |||| ||| ||| Sbjct 1134 AATGACCAGAGTGGTATTTCAACAATGACTCCACGAACACTGGCGTGCCCGCTTCACAGT 1193 Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCC 300 |||||||||||||||||||| | |||||||| ||||||||||||| |||| |||||| | Sbjct 1194 CTCCCACCTATCCTACACAAGTCACACCGAATACCAATACCAAGCTGTAGTAAAGGTCAC 1253 Query 301 GGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGG 360 ||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||| ||| Sbjct 1254 GGGGTCTTTCCGTCCTGCTGCGCGTAACGAGCATCTTTACTCGTAATGCAATTTCGCCGA 1313 Query 361 GCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCG 420 | |||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 1314 GTTCATGGTGGAGACAGCTGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCG 1373 Query 421 ACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCA 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1374 ACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTAA 1433 Query 481 ATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGG 540 ||| || || || | | || || || ||||||||||||||||||||||| Sbjct 1434 ATTCAAAGCTTC-GAC-CGAAGT------CTAACCTCTCCTCTTAACCTTCCAGCACCGG 1485 Query 541 GCAGGCGTCAGTCCGTATACCTC 563 |||||||||||||||||||| || Sbjct 1486 GCAGGCGTCAGTCCGTATACGTC 1508 >seq1792 Length=5876 Score = 338 bits (374), Expect = 2e-90 Identities = 414/564 (73%), Gaps = 12/564 (2%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||| |||||||||| |||| | ||| ||| ||| |||| | | ||||| || Sbjct 3161 TCGACTTGTGGGTCTCGCAGTTAAGCGCGCTTTTGCCTTTATACTCTACGCGTGATTTCC 3220 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| |||||| | ||||| | | |||||||||| ||| ||||| | ||||||||| Sbjct 3221 GACCACGCTGAGCGCACCTTCGTACTCCTCCGTTACTCTTTAGGAGGAGA-CCGCCCCAG 3279 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 | |||||||||||||| || |||| | ||| ||| | ||| || |||||| || Sbjct 3280 TCAAACTACCCACCAGACATGGTCCTCGTCCCGGATAACGGGACAGAGTTAGAACCTCAA 3339 Query 181 TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGT 240 || ||| |||||||||||| | | ||||| | | ||| |||| | | ||| || Sbjct 3340 TATTACCAGGGTGGTATTTCAAGGATGGCTCCATAGCAACTGGCGTCACTACTTCAAAGC 3399 Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC- 299 |||||||||||||||||||| | | || |||| |||||| ||| ||||| | Sbjct 3400 CTCCCACCTATCCTACACAAGTAAGATCAAAGTTCAATGTCAAGCTGCAGTAAAGGTTCA 3459 Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 |||||||||| |||| |||||| | | ||||||| || | | | ||||||| | Sbjct 3460 CGGGGTCTTTCCGTCTAGCCGCGGGTACACCGCATCTTCACGGCGATTTCGATTTCACTG 3519 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 |||| || | |||||||| || ||| ||||||||||||||||||||||||||| Sbjct 3520 AGCCTCTGCTGGAGACAGCGCCCCCATCATTATGCCATTCGTGCAGGTCGGAACTTACCC 3579 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 3580 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 3639 Query 480 AATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCG 539 || | || || | || ||| || | ||||||||||||||||| Sbjct 3640 GATCAAGAGCTTCGCTTAC----------GCTAACCCCATCAATTAACCTTCCAGCACCG 3689 Query 540 GGCAGGCGTCAGTCCGTATACCTC 563 ||||||| ||| || ||||| || Sbjct 3690 GGCAGGCATCACACCCTATACGTC 3713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702337521920