Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq3616 163 9e-38 seq1164 109 2e-21 seq3425 107 6e-21 seq2988 107 6e-21 seq3641 91.5 4e-16 seq3529 80.6 8e-13 >seq3616 Length=445727 Score = 163 bits (180), Expect = 9e-38 Identities = 289/415 (70%), Gaps = 41/415 (10%) Strand=Plus/Plus Query 89 GCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACC 148 ||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||| Sbjct 4524 GCCTGCTGCCTTCCTTGGACGTGGTAGCCGTTTCTAAGGCTCCCTCTCCGGAGTCGAACC 4583 Query 149 CTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGAT 208 || |||| ||||||||||| |||||||||| ||| | |||||||| |||||| Sbjct 4584 CTTATTCTCCGTTACCCGTAACAACCATGGTAGTCCAATGAACTACCATC--TAGTTGAA 4641 Query 209 AGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTC-----GTTAA-- 261 |||||||| ||| | ||| | || | || ||| | || || Sbjct 4642 AGGGCAGA----------CACCCTTTTCGGATAGAGTCGAT-CGAAACCGACAGTAAACT 4690 Query 262 --GTTATTATGAATCACCAAGGAGC-CCCGAAGGGCGTTGGTTTTTTATCTAATAAATAC 318 ||||| || ||| ||| | | ||||| ||||| | | |||||||| | | Sbjct 4691 GCTTTATTCAGAGTCAACAAACAACGTCCGAAAACGTTTGGTCTGT--TCTAATAATTGC 4748 Query 319 ACCCCTTCCGAAGTCGGGGTTT-TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCC 377 ||||| | | || ||||||| | |||||||||||||| || ||| || | ||||||| Sbjct 4749 ACCCCGCCTTACGTTGGGGTTTAGTTGCATGTATTAGCTCCAGTATTTCCGCAGTTATCC 4808 Query 378 ATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCAC 437 || ||| | | | | ||| | |||| ||| | ||||||||| | |||| |||| Sbjct 4809 ATATAGGA--TTCCGAACAAGGA---GATATCTGCTCTAATGAGCCGTACGCAATTTC-- 4861 Query 438 TGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATAT 492 |||| | | | || ||||||||||||||||||| | ||||||| Sbjct 4862 -------ATTGATGAATCAAAG-CATGCATGGCTTAATCTTTTACTTGAGCATAT 4908 >seq1164 Length=3755 Score = 109 bits (120), Expect = 2e-21 Identities = 92/107 (86%), Gaps = 6/107 (6%) Strand=Plus/Minus Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134 ||| ||| || |||||||||||| ||||||||| ||||||||||||||| || ||||||| Sbjct 2833 TGGATAAGTTTCGCGCCTGCTGC-TTCCTTGGACGTGGTAGCCGTTTCTAAG-CTCCCTC 2776 Query 135 TCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 |||||| ||||||||| ||| | ||||| |||| | |||||||||| Sbjct 2775 TCCGGAGTCGAACCCTTATT-CTCGTTA-CCGT--ACACCATGGTAG 2733 >seq3425 Length=99534 Score = 107 bits (118), Expect = 6e-21 Identities = 106/136 (78%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 79 TAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG 138 ||| || |||||||||||||||| ||||| ||||| | ||||| ||||||||||| | Sbjct 96388 TAAGTTTCGCGCCTGCTGCCTTCTTTGGACGTGGTGACGGTTTCAAAGGCTCCCTCTTTG 96447 Query 139 GAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATC 198 || ||||||| ||||| ||||||||||| ||||||| || ||| | ||| |||| Sbjct 96448 GAGTCGAACCACAATTCTCCGTTACCCGTAACAACCATGGGAGCCCAATGAACTAACATC 96507 Query 199 GAAAGTTGATAGGGCA 214 || |||| |||||| Sbjct 96508 TAA--TTGAAAGGGCA 96521 >seq2988 Length=11229 Score = 107 bits (118), Expect = 6e-21 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 88 CGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAAC 147 |||||||| ||||| ||||| ||||| ||||||||| ||||||||||||| ||||||| | Sbjct 2452 CGCCTGCTTCCTTCATTGGACGTGGTCGCCGTTTCTAAGGCTCCCTCTCCAGAATCGACC 2511 Query 148 CCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||| | || ||||||||||| | |||||||| Sbjct 2512 CCTTAATCTCCGTTACCCGTAAAAACCATGGT 2543 >seq3641 Length=528519 Score = 91.5 bits (100), Expect = 4e-16 Identities = 106/141 (75%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 74 TTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCT 133 |||| |||||| |||||||||||||||||||||| || | ||||| | ||||||| Sbjct 40203 TTGGATAATTTTCGCGCCTGCTGCCTTCCTTGGACGT-TTTTCCGTTACCAAGGCTCCAA 40261 Query 134 CTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTA 193 ||||| |||||| |||| ||||||||| | | ||| ||||| ||| | |||| Sbjct 40262 AATTGGAATTAAACCCTTATTCTCCGTTACCCATAAAATCCACGGTAGACCAATGACCTA 40321 Query 194 CCATCGAAAGTTGATAGGGCA 214 ||||| | |||| |||||| Sbjct 40322 CCATC--TACTTGAAAGGGCA 40340 >seq3529 Length=270758 Score = 80.6 bits (88), Expect = 8e-13 Identities = 97/131 (74%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 86 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGA 145 ||| |||||||||||||| | | | | ||||||| | |||||||| |||||| |||| Sbjct 48249 CGCACCTGCTGCCTTCCTAGTAAGATGACGCCGTTTTTACGGCTCCCTTTCCGGAGTCGA 48190 Query 146 ACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTT 205 | | | ||| ||| |||||||| | |||||||| ||| |||||| | |||| Sbjct 48189 AACTTTGTTCTCCGATACCCGTTTCAAACATGGTAGTCCAACGAACTACCA--GCTAGTT 48132 Query 206 GATAGGGCAGA 216 || |||||||| Sbjct 48131 GAAAGGGCAGA 48121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510344568320