Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3663 181 8e-41 seq3283 140 3e-28 >seq3663 Length=2118579 Score = 181 bits (200), Expect = 8e-41 Identities = 422/634 (67%), Gaps = 2/634 (0%) Strand=Plus/Minus Query 66298 TGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTAT 66357 ||| |||||||| ||||||| ||||| || ||||| ||| || ||||| || || Sbjct 1959034 TGGGCACATCAGAGACCAATTCTGATCCTTCTCGACACGCTTCATGAAGAGATCCGGAAT 1958975 Query 66358 CCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCA 66416 |||||| ||| ||| | || || || || | ||| || || ||| || ||||| | Sbjct 1958974 CCAGAGAGCGAGGAACAAGTCACGAGCACGCTCCTCTTCTGGTCCAGTG-TTCTTGCGGA 1958916 Query 66417 AGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCA 66476 | |||||| || | |||||||||||||| || |||||||||||||| | || Sbjct 1958915 GTGACACGAACTCGAAAACATCGGCATGCCATGGCTCGAGGTAGATGGCGAATGCTCCTG 1958856 Query 66477 TACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCG 66536 ||| ||| || ||||| ||||| || ||||| || ||| ||||||| | ||| | Sbjct 1958855 GACGCTTGTTTCCTCCTTGATCGACATAACGAGCAGTGTTATTGTAGACACGAAGCATTG 1958796 Query 66537 GTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATAT 66596 ||| ||| ||||| ||| | || || || || ||||| || || || || || | Sbjct 1958795 GTATGAGTCCGTTCGATGTTCCGTTAGTTCCAGCGATGACAGAACCGGTGGCACGAATCT 1958736 Query 66597 CGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTG 66656 ||| ||||| || || || || || || ||||||||||| |||||| | || | Sbjct 1958735 TGTGGACATTGAGCCCGATTCCTCCAGCGCTCTTCGAGATGAGAGCACACTGCTTCAAAG 1958676 Query 66657 TCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTT 66716 | | | || || ||| || || | | || ||||| | | |||| || | || Sbjct 1958675 TGTCGTAGATTCCAAGAATCGAATCCTCGCTCATCGTCAGCAAGAAGCAAGACGACATTT 1958616 Query 66717 GGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAG 66776 | || | ||| | | |||||| || || | ||| || || | ||| | | Sbjct 1958615 GTGGACGGCATGTTCCAGAGTTGAAGAGAGTTGGAGAAGCATGAGTCATGTAGCGCTCCG 1958556 Query 66777 ACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCAC 66836 |||| |||||||||||||||| ||||| |||||| || || || || |||| | | Sbjct 1958555 ACATCAGATTGTACGTCTCGATGGCAGCAGCAATGTCCTCTCCGTGGATTCCGATAGAAA 1958496 Query 66837 ATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGG 66896 ||||||| | | ||| ||||| || || | | ||||| | | | ||||| Sbjct 1958495 CACGCATCAACATCTGTTGTGGCCGCTCAACGATTTCCTTGTTGATTTTGAGAAGGTAGG 1958436 Query 66897 AGCGTTCCAGGGTCTTGATACCAAAGTACGAGTA 66930 | ||||| || || |||| || ||||| | ||| Sbjct 1958435 AACGTTCAAGAGTTTTGAATCCGAAGTAGGTGTA 1958402 Score = 98.7 bits (108), Expect = 8e-16 Identities = 303/464 (65%), Gaps = 6/464 (1%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| |||||||| | ||||| |||| | ||| || | | |||||||| || ||| Sbjct 1960520 TCGACTGTGAACTGAACAGCATTGACAGCTGGCTTCGTGCGCAAGTAGTACATTCCAGTC 1960461 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 || ||||| ||| | ||||| |||||||| | | | || || | || | Sbjct 1960460 TTAAGGCCTTGCTTCCATCCGTAGAAGTGCATCGAAGTGATTGCAGCGTAGCTTGGTTTA 1960401 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 |||| || ||||| | || ||| ||||| ||| | |||||||| |||||||| Sbjct 1960400 GCCATGTGAATATTGAGAGATTGAGATTGATCAATGAATGCTCCACGATCAGCAGCCATC 1960341 Query 65258 TCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACC-TCAAT 65316 |||||||| | || || ||||| || || || || | | || ||| Sbjct 1960340 TCAATGATTTCCTTTTGAGAGATTTCCCACACAGTGAGATAGAG-CTCCTTAATGTCAGC 1960282 Query 65317 TGGAATCTCCTCAATGTCCTGGACTGAACCACGACGT--GCAATAATGCGATTACGCATC 65374 ||| || || |||| ||| | || || | || || || | ||| || ||| Sbjct 1960281 TGGGATTTCTGGGATGTTCTGAATGGATCC--GTTGTTGGCTATGAGGCGGTTCTTCATT 1960224 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGG 65434 || | |||||| || || | | || | | || || |||||| | ||| Sbjct 1960223 TCATCAGTCCACAATCCTCTCTCAACCAAATCCTTGAGCATATGTGGATTGACTATCTGG 1960164 Query 65435 AACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCA 65494 || || || || || |||||||| ||||||||| || ||| || |||| || ||| Sbjct 1960163 AAGTCTCCAGAAAGAACACGACGAGAATAGATGTTTGAGGTGTATGGCTCAATCGACTCA 1960104 Query 65495 GTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGC 65538 |||| || |||||||| |||||||| ||||||||||| ||||| Sbjct 1960103 TTGTTTCCAAGAATTTGAGCAGTAGAAGCAGTTGGCATTGGAGC 1960060 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073 || || || ||||||||||| ||||| || ||||| | ||||| | ||||| ||||| Sbjct 1959557 GAAGCAAGATTGCAGACAGCGATCTCATCTGGAGCTGAGTACTCCATGATTTCAGTGCAG 1959498 Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133 || || ||| ||||| || | ||| || || || |||||||||| ||||| Sbjct 1959497 AGGTTGGAGCACTTGATGGTTCCGAGATTTTGCTGGTTGGACTTGCGATTGGCAGCATCT 1959438 Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||||| | ||||| ||| || ||||||| ||| Sbjct 1959437 TTGTAGGTGATGTATGGAAGTCCAGTCTCAATTTG 1959403 >seq3283 Length=35878 Score = 140 bits (154), Expect = 3e-28 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 9159 TACGGTTTCCAGTGGCGACATTTCGGTGCTCGGTACATCGATTGTCATACGGACTATACG 9218 ||||||||||||||||| ||||||||||| ||| | |||||||||||||| || ||| Sbjct 10726 TACGGTTTCCAGTGGCGTCATTTCGGTGCGAAATACGTGGATTGTCATACGGATTACACG 10667 Query 9219 GGCCAAGGTGTGGATCAGTTGGCGCAATGTATGCATCAGATCCAATATGAGCCGAGTAGT 9278 || |||| |||||||||||||| | || | ||||||| | ||||| |||| Sbjct 10666 GGAAAAGGGGTGGATCAGTTGGCTGAGGTCATTCGACAGATCCGTCAGGAGCCAGATAGT 10607 Query 9279 CGACGCATGATTATGACTGCCTGGAATCCGAACGATTTGGACAAGATGGTATTGCCGCCA 9338 ||||| || |||||| | || |||||||||| ||||||| | ||||| |||| || Sbjct 10606 CGACGTATTATTATGTCGGCGTGGAATCCGACGGATTTGGGAGAAATGGTTCTGCCACCG 10547 Query 9339 TGCCATATGA 9348 || |||| || Sbjct 10546 TGTCATACGA 10537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397550217528800