Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq989 105 9e-18 seq3544 87.8 2e-12 seq3189 87.8 2e-12 seq2029 87.8 2e-12 >seq989 Length=5214 Score = 105 bits (116), Expect = 9e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142793 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGT 142852 ||||| |||||| |||||||||||||||||||||||| || ||| ||||||||||||| | Sbjct 180 GGGGACTTAGCTTAGTTGGTAGAGCGCCTGCTTTGCACGCGGGAGGTCAACGGTTCGACT 121 Query 142853 CCGTTATTCTCCACCA 142868 |||||| ||||||||| Sbjct 120 CCGTTAGTCTCCACCA 105 >seq3544 Length=228915 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 162648 AGGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACT 162707 ||||||||| ||||| || || ||||| || || | || ||| || | |||| Sbjct 3891 AGGAGAGACCTTCGTAACCCGTAAGATTACTCGTTCCGTTGCCAAAATCAGCCTCGGACA 3832 Query 162708 CCAAAGTGATCTAC--AACTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAA 162765 || | ||| | |||| |||||||| | ||| | ||||| ||||||||||||| | Sbjct 3831 ACA--GGAATCCATCGAACTCGGAAACCTGAGTGCTCTCCGTGATTGGGGACACGCCAGA 3774 Query 162766 GACTACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATC 162825 || ||||| || ||||||||| || || || || || |||||||| | |||||| Sbjct 3773 GAGTACGTCGAAGCTATGTGGAGAATCCTCCAACATGATGCTCCAGATGACTTTGTGATT 3714 Query 162826 GCAACTGGTGAGCA 162839 || ||||| |||| Sbjct 3713 GCCACTGGAAAGCA 3700 >seq3189 Length=10796 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 162648 AGGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACT 162707 ||||||||| ||||| || || ||||| || || | || ||| || | |||| Sbjct 8718 AGGAGAGACCTTCGTAACCCGTAAGATTACTCGTTCCGTTGCCAAAATCAGCCTCGGACA 8777 Query 162708 CCAAAGTGATCTAC--AACTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAA 162765 || | ||| | |||| |||||||| | ||| | ||||| ||||||||||||| | Sbjct 8778 ACA--GGAATCCATCGAACTCGGAAACCTGAGTGCTCTCCGTGATTGGGGACACGCCAGA 8835 Query 162766 GACTACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATC 162825 || ||||| || ||||||||| || || || || || |||||||| | |||||| Sbjct 8836 GAGTACGTCGAAGCTATGTGGAGAATCCTCCAACATGATGCTCCAGATGACTTTGTGATT 8895 Query 162826 GCAACTGGTGAGCA 162839 || ||||| |||| Sbjct 8896 GCCACTGGAAAGCA 8909 >seq2029 Length=8567 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 162648 AGGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACT 162707 |||||| || ||||| || || |||||| || || | || ||| || | |||| Sbjct 8097 AGGAGAAACCTTCGTAACCCGTAAGATCACTCGTTCCGTTGCCAAAATCAGCCTTGGACA 8038 Query 162708 CCAAAGTGATCTAC--AACTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAA 162765 || | ||| | |||||||||| || | ||| | ||||| ||||||||||||| | Sbjct 8037 ACA--GGAATCCATCGAACTTGGAAATCTGAGTGCTCTCCGTGATTGGGGACACGCCAGA 7980 Query 162766 GACTACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATC 162825 || ||||| || ||||||||| || || || || || |||||||| | |||||| Sbjct 7979 GAGTACGTCGAAGCTATGTGGAGAATCCTCCAACATGATGCTCCAGATGACTTTGTGATT 7920 Query 162826 GCAACTGGTGAGCA 162839 || ||||| |||| Sbjct 7919 GCCACTGGAAAGCA 7906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691427479309200