Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq4324 138 2e-30 seq13164 132 9e-29 >seq4324 Length=7871 Score = 138 bits (152), Expect = 2e-30 Identities = 192/257 (75%), Gaps = 9/257 (4%) Strand=Plus/Plus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 ||||| | ||||| ||||| |||| |||||| |||| || || ||||| ||||| | Sbjct 701 GCCAGCAGGTTTACCTTGAATAAATCAGAGTGCTCAATACAAGCGCTTGCTTGAATAGCT 760 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 | ||||||||||| || ||||| | ||||||| ||||||||| |||||| || | | Sbjct 761 CATCATGGAATAATGAAACAGGAC-TTCGGTTCT-TTTTGTTGG-TTCTAGAACTGATTT 817 Query 185 AATGATTAATAGGGA-TAGTCGGGGGTGTCAGTATTCAAT-TGTCAGAGGTGAAATTCTT 242 |||| |||| ||||| | |||||| | ||| ||| | | ||||||||||||| | Sbjct 818 AATGGTTAAGAGGGACAAACCGGGGGCATTCGTA-TCATTACGCGAGAGGTGAAATTCGT 876 Query 243 GGA-TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAG 301 ||| || || |||| | || |||||||| || ||||| |||| ||||||||||| Sbjct 877 GGACCGTAGTG-AGACGCCCAACAGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCA- 934 Query 302 TGAACGAAAGTTAGGGG 318 |||||||||| || || Sbjct 935 AGAACGAAAGTCAGAGG 951 >seq13164 Length=340 Score = 132 bits (146), Expect = 9e-29 Identities = 163/216 (75%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 73 TTTTACTTTGAAAAAATTAGAGTG-TTCAAAGCAGGCCTTTGCTCGAATACATTAGCATG 131 |||||||||||||||||||||||| |||||| ||||| ||| | |||| | ||||| Sbjct 128 TTTTACTTTGAAAAAATTAGAGTGCTTCAAA-CAGGCTAGTGCCTGCATACTCTTGCATG 186 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 |||||||||||||||| | ||||||||||||||||||| | || | ||||| || Sbjct 187 GAATAATAGAATAGGATCT-TGGTTCTATTTTGTTGGTTTTCTGAACTGAGATAATGGTT 245 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA-TTTAT 250 || ||||| | |||||| | |||| || |||||||||||||||||| || Sbjct 246 AAGAGGGACGGACGGGGGCATTCGTATCGCTGCGTGAGAGGTGAAATTCTTGGACCGTAG 305 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGAT 286 | |||| | ||||||||||| || ||||| || Sbjct 306 CG-AGACGCCCGACTGCGAAAGCATTTGCCAAGAAT 340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915060331328