Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq4324 215 8e-54 seq4307 96.9 6e-18 seq8092 75.2 2e-11 seq8065 73.4 6e-11 >seq4324 Length=7871 Score = 215 bits (238), Expect = 8e-54 Identities = 207/260 (80%), Gaps = 9/260 (3%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 || || || |||| ||||||||| ||||||| |||| | |||||||||||||||||||| Sbjct 1444 ACCCGCTGACTCCACCAGTGTAGCACGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA 1385 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||| | ||||| | || |||| | || | ||||||||||||| | Sbjct 1384 CCTGTTATCG-CTCAATC-TCGTGCGGCTAAACACCGCTTATCCCTCTAAGAAGTTA--T 1329 Query 122 ACCAACC---ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 || |||| | | ||| |||||||||||| || |||||| ||||||||||||| Sbjct 1328 ACGAACCCGAAGATTCG--CCAACTATTTAGCAGGCTAGAGTCTCGCTCGTTATCGGAAT 1271 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||||||||||||||||||||||||||||||||||| ||| |||| | Sbjct 1270 AAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCAACCACCAAATCGA 1211 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| |||||||||| Sbjct 1210 GAAAGAGCTTTCAATCTGTC 1191 >seq4307 Length=7908 Score = 96.9 bits (106), Expect = 6e-18 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 150 CAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAA 209 |||| || || | | ||||||| ||||| |||||||||| ||||||||||||| ||||| Sbjct 325 CAGGCTAGAGTTTTGCTCGTTATTGGAATAAACCAGACAACTCACTCCACCAACAAAGAA 384 Query 210 CGGCCATGCACCACCACCCATAGAATCAAGAAA 242 |||||||||||||||| ||| ||| ||||| Sbjct 385 CGGCCATGCACCACCAACCACCATATCGAGAAA 417 Score = 80.6 bits (88), Expect = 4e-13 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225 |||||||||| ||||| |||||||| ||||| | ||||||||||||||||||||||| Sbjct 58 TTATCGGAATAAACCATACAAATCATTCCACTAGCTAAGAACGGCCATGCACCACCA 2 >seq8092 Length=2214 Score = 75.2 bits (82), Expect = 2e-11 Identities = 75/95 (79%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 171 ATCGGAATTAA-CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 229 ||||||| || |||||| || |||| || ||| || |||||||||||| |||| ||| Sbjct 1329 ATCGGAAAAAAACCAGACGAACCACTACAGAAACAAATTACGGCCATGCACTACCAACCA 1388 Query 230 TAGAATCAAGAAAGAGCTATCAATCTGTCC-TCCC 263 |||||||||||| | ||||||||||| |||| Sbjct 1389 CCATATCAAGAAAGAGTTTTCAATCTGTCCGTCCC 1423 >seq8065 Length=2238 Score = 73.4 bits (80), Expect = 6e-11 Identities = 52/59 (88%), Gaps = 3/59 (5%) Strand=Plus/Minus Query 171 ATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 229 |||| ||| ||||||||||||||||||| ||||| |||||||||||||||||| ||| Sbjct 454 ATCGTAATAAACCAGACAAATCACTCCA---ACTAAAAACGGCCATGCACCACCAACCA 399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796682200341