Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq4324 241 2e-61 seq14264 159 6e-37 >seq4324 Length=7871 Score = 241 bits (266), Expect = 2e-61 Identities = 168/191 (88%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 103 CAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATC 162 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 5151 CAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATC 5092 Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT 222 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 5091 AAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT 5032 Query 223 TTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCAT 282 ||||| ||||||| ||| ||| ||| |||||||||||||||||| ||||| Sbjct 5031 TTCTGACACCTCTTACCTGAAACAATCAGGATTAAAAGGATCGATAGGCCACGCTTTCGC 4972 Query 283 GGTTTGTATTC 293 ||| |||| || Sbjct 4971 GGTCTGTACTC 4961 >seq14264 Length=247 Score = 159 bits (176), Expect = 6e-37 Identities = 102/111 (92%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 227 GTCAACAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 168 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAG 140 |||||||||||||||||||||||||| ||||||||| || | |||||| Sbjct 167 ATTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGTTTTGCAGTGATAG 117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854269610016