Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= AAMG01001693.1 Length=610 Score E Sequences producing significant alignments: (Bits) Value seq9773 235 2e-59 >seq9773 Length=1191 Score = 235 bits (260), Expect = 2e-59 Identities = 216/273 (79%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 252 CAGCGGCTGTGGCGTTATCGCATGCGCCAGAGCATGAGTCGCCGGGGAAATTGCTGGGAC 311 || ||| ||||||| ||||| ||| ||||||||||| |||||||| || |||||||| Sbjct 1189 CAACGGTTGTGGCGATATCGGATGGAACAGAGCATGAGCCGCCGGGGCAACTGCTGGGAT 1130 Query 312 AATGCGCCAATGGAGCGCGTGTTCCGCAGCTTGAAAACGGAGTGGATACCGACCACGGGT 371 || |||| |||||||| |||||||||| |||||| |||||||||| || || ||| Sbjct 1129 AACTCGCCGATGGAGCGATTGTTCCGCAGTTTGAAATCGGAGTGGATTCCACAGACCGGT 1070 Query 372 TACCGAACGGCTCAAGAAGCCCAGCGCGATATCAGCCAATTCTTAATGCATCGGTACAAC 431 |||| || ||||| || ||||| || || ||||| || | | | ||||| || |||||| Sbjct 1069 TACCTGACAGCTCAGGAGGCCCAACGGGACATCAGTCATTACCTGATGCACCGCTACAAC 1010 Query 432 TGGATTCGCCCCCATCGATTCAACGGTGGGCTGGCGCCAGCTCGGGCCGAAGAAAAACTT 491 ||||| | || |||| |||||||| |||||| |||| || |||||||||||||||| Sbjct 1009 TGGATCAGGCCGCATCAATTCAACGATGGGCTACCGCCTGCGGTGGCCGAAGAAAAACTT 950 Query 492 AACGTCGTGTCCGGGATTAGTTGACCACTACAG 524 ||| |||||||||| |||||||||||||| Sbjct 949 AACCCACTGTCCGGGATGGGTTGACCACTACAG 917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1846109415299