Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq4324 251 2e-64 seq13961 170 6e-40 >seq4324 Length=7871 Score = 251 bits (278), Expect = 2e-64 Identities = 277/362 (77%), Gaps = 14/362 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| |||| || ||| |||| | ||||||||||||| ||||| | Sbjct 4927 CTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTACGTTACG 4868 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| | |||||| ||||||||| |||||||||| | ||||| |||| || | | || Sbjct 4867 ATTTGATAGATGTACCGCCCCAGTCAAACTCCCCGCTTGACACTGTCTTCGAGGAGAGTC 4808 Query 127 G----GCCCGCGAAGGAC----CTTAACGCCA-GAAAATGGTCGGTGAAGACCAGTTC-C 176 ||| || | | ||||| || ||||| | | |||||| ||| ||| | Sbjct 4807 ACGGTGCCATAAAATGGCTCCGCTTAATGCTTCGAAAAAAGGCCGTGAAG-CCAATTCTC 4749 Query 177 GCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACG 235 || | || |||||||| | |||| | || ||||||||||||| || ||||| | Sbjct 4748 TTTTAACCGAATAAGTAAAGAGTCGATGAAAGTGGTGGTATTTCACTGTCGACCGAA--G 4691 Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 ||||||| ||| |||||||||||| | | ||||||| ||| |||||||||||||||| Sbjct 4690 TCTCCCACCTATGCTACACCTCTCATGACTCTTCACAATGTCAAACTAGAGTCAAGCTCA 4631 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 4630 ACAGGGTCTTCTTTCCCCGCTATTTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 4571 Query 356 GA 357 || Sbjct 4570 GA 4569 Score = 125 bits (138), Expect = 2e-26 Identities = 81/89 (91%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 432 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 491 ||||||||||||||||||||||||||||||||||||||||||| | ||||| || | | Sbjct 4407 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTACTCGAATTACTACGAT 4348 Query 492 TTGACATTCAGAGCACTGGGCAGAAATCA 520 || |||||||||||||||||||||||||| Sbjct 4347 TTAACATTCAGAGCACTGGGCAGAAATCA 4319 >seq13961 Length=267 Score = 170 bits (188), Expect = 6e-40 Identities = 134/160 (84%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGGCTCCCAC 243 || |||||||| || |||| | ||||||||||||| | ||||| | ||||||| Sbjct 110 GAATAAGTAAAGAATCGATGANNNNNGTGGTATTTCACTGTCAACCGAAGC--CTCCCAC 167 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| |||||||||||| | | |||||| |||||||||||||||||||||||||||||| Sbjct 168 TTATCCTACACCTCTCATGACTCTTCACAGAGTCGGACTAGAGTCAAGCTCAACAGGGTC 227 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343 |||||||||||||| | ||||||||||||||||||||| Sbjct 228 TTCTTTCCCCGCTGTGTTTGCCAAGCCCGTTCCCTTGGCT 267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634950452128