Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq12840 89.7 8e-16 seq15007 78.8 2e-12 >seq12840 Length=377 Score = 89.7 bits (98), Expect = 8e-16 Identities = 89/113 (79%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||||| | | || | || | | || | Sbjct 55 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTCACGTGCTTGGCCGATCGGCCAAT 112 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||| ||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 113 GGTGCGAGGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCAGAATC 165 >seq15007 Length=211 Score = 78.8 bits (86), Expect = 2e-12 Identities = 88/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||| || | |||||| ||| | | || | | | || Sbjct 54 GTACGAGAGGAACCGCAGT-TTCGGAC-ATTTGGTTCATGCACTCGGCCGAGCGGCCGGT 111 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCA 115 | |||||||||||||| || |||||||| ||||||||||||||| | ||| ||| Sbjct 112 GGTGCGAAGCTACCATCCGCGGGATTATGCCTGAACGCCTCTAAGGCCGAAGCCA 166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819078888704