Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq13341 192 2e-46 seq4324 163 9e-38 seq9142 93.3 1e-16 seq5858 80.6 8e-13 seq11500 75.2 3e-11 >seq13341 Length=321 Score = 192 bits (212), Expect = 2e-46 Identities = 177/228 (78%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | |||||||||||| ||| | || |||||||||||||||||||||||||||| Sbjct 229 TATTTTTCGTCACTACCTCCTCGTTCTGAGAGTGGGTAATTTGCGCGCCTGCTGCCTTCC 170 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 |||| |||||||||||||||||||||||||| ||||||||||| Sbjct 169 TTGGNNNNNNNNNNNNNNNNNNAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTA 110 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||||| |||||||||| | | ||||||||||||||||||| |||||| ||||| Sbjct 109 CCCGTGACAACCATGGTAGTCGCAGAAACTACCATCGAAAGTTGATAAGGCAGACATTTG 50 Query 223 AATGAACCATCGCCGGCTC-AAGGCCATGCGATTCG--TTAAGTTATT 267 || || | |||||||| | ||||||||||||| || |||||||| Sbjct 49 AAAGATGCGTCGCCGGCACAAAGGCCATGCGATCCGAACAAAGTTATT 2 >seq4324 Length=7871 Score = 163 bits (180), Expect = 9e-38 Identities = 122/142 (86%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134 ||| ||| || |||||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 424 TGGATAAGTTTCGCGCCTGCTGCCTTCCTTGGACGTGGTAGCCGTTTCTAAGGCTCCCTC 365 Query 135 TCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTAC 194 |||||| ||||||||| |||| ||||||||||| |||||||||| ||| || |||| Sbjct 364 TCCGGAGTCGAACCCTTATTCTCCGTTACCCGTAACAACCATGGTAGTCCAATAAACTAC 305 Query 195 CATCGAAAGTTGATAGGGCAGA 216 |||| |||||| |||||||| Sbjct 304 CATC--TAGTTGAAAGGGCAGA 285 >seq9142 Length=1506 Score = 93.3 bits (102), Expect = 1e-16 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134 ||| ||| || |||||| ||||||||||||||| |||| ||| |||||| ||||||||| Sbjct 1223 TGGATAAGTTTCGCGCCAGCTGCCTTCCTTGGACGTGGAAGCAGTTTCTAAGGCTCCCTA 1282 Query 135 TCCGGAATCGAACCCTAATTC 155 |||||| || |||||| |||| Sbjct 1283 TCCGGATTCAAACCCTTATTC 1303 >seq5858 Length=4857 Score = 80.6 bits (88), Expect = 8e-13 Identities = 65/79 (82%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134 ||| ||| || || |||||||||||||||| | ||||||| |||||| |||||||||| Sbjct 162 TGGATAAGTTTTGCTCCTGCTGCCTTCCTTGAACGTGGTAGTAGTTTCTAAGGCTCCCTC 103 Query 135 TCCGGAATCGAACCCTAAT 153 || ||| |||||| || || Sbjct 102 TCAGGAGTCGAACTCTTAT 84 >seq11500 Length=605 Score = 75.2 bits (82), Expect = 3e-11 Identities = 71/90 (79%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 127 GCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCAC 186 |||||||||||||| ||||||||| |||| ||||||| || |||||||||| ||| Sbjct 1 GCTCCCTCTCCGGAGTCGAACCCTCATTCTCCGTTACAAGTAACAACCATGGTAGTCCAA 60 Query 187 TATCCTACCATCGAAAGTTGATAGGGCAGA 216 || | |||||| |||||| | |||||| Sbjct 61 TAAACCACCATC--TAGTTGAAACGGCAGA 88 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510169497856