Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq433 134 1e-26 seq2416 116 3e-21 seq1864 98.7 8e-16 seq126 93.3 3e-14 >seq433 Length=49269 Score = 134 bits (148), Expect = 1e-26 Identities = 246/356 (69%), Gaps = 12/356 (3%) Strand=Plus/Minus Query 61258 GAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATT 61317 ||||| ||| || | ||||| | || || ||||| || | |||||||| ||||| || Sbjct 30470 GAACGCTTCTCGAATGAGGTCAAGGTCTCCGAGGCTCGCTTCTTCTACGGTTTCCAAATC 30411 Query 61318 GCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAG 61377 ||||| ||||| |||| |||||||||||| |||||||| || |||||| | || Sbjct 30410 GCCATCGAGAACATCCATTCGGAGATGTACTCAAAGCTCATCGAGACATACATCCGCGAT 30351 Query 61378 CGGGCGGAACGTGAACGATTGTTCAATGCCATC---GAGA-CGATACCGGCGGTGAAGCG 61433 | ||| ||| | | ||||||| |||||| ||| ||| | | ||| Sbjct 30350 GAGAAGGAGCGTCACACACTGTTCAACGCCATCTTCGAGTTCGAATTCATC----AAGAA 30295 Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATT 61493 ||| || || ||||| | || ||||| | || | ||| | || | || || | Sbjct 30294 GAAGGCCGACTGGGCTCTTAAATGGATTTCGGATAAGAAGGCGTCGTTCGCCGAGAGACT 30235 Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553 | | || || || | |||||||| | || ||||||||||| || ||| | |||||||| Sbjct 30234 GATTGCTTTCGCCGCCGTCGAGGGCATCTTCTTCAGTGGATCTTTCGCCTCCATCTTTTG 30175 Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACC--TTCAGCAATGAGTTGATATC 61607 ||||||||| || ||| | ||||| || |||| ||| |||||||||||| || Sbjct 30174 GTTGAAGAAGCGCGGATTGATGCCAGGATTGACGCATTC--CAATGAGTTGATCTC 30121 >seq2416 Length=15437 Score = 116 bits (128), Expect = 3e-21 Identities = 227/333 (68%), Gaps = 8/333 (2%) Strand=Plus/Minus Query 61258 GAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATT 61317 ||||| ||| || | || || | || || ||||| || | |||||||| ||||| || Sbjct 2663 GAACGCTTCTCGAATGAAGTCAAGGTCTCCGAGGCCCGCTTCTTCTACGGTTTCCAAATC 2604 Query 61318 GCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAG 61377 ||||| ||||| |||| |||||||||||| ||||||| || |||||| | || Sbjct 2603 GCCATCGAGAACATCCATTCGGAGATGTACTCGAAACTCATCGCGACATACATCCGCGAC 2544 Query 61378 CGGGCGGAACGTGAACGATTGTTCAATGCCATC---GAGA-CGATACCGGCGGTGAAGCG 61433 | ||| ||| | | ||||||| || ||| ||| ||| | | ||| Sbjct 2543 GAGAAGGAGCGTCACACACTGTTCAACGCAATCTTCGAGTTCGAGTTCATC----AAGAA 2488 Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATT 61493 ||| || || ||||| | || ||||| | || | ||| | || | || || | Sbjct 2487 GAAGGCCGACTGGGCTCTTAAATGGATTTCGGATAAGAAGGCGTCGTTCGCCGAGAGACT 2428 Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553 | | || ||||| | || ||||| | || |||||||||||||| ||| | |||||||| Sbjct 2427 GATTGCTTTTGCCGCCGTTGAGGGCATCTTCTTCAGTGGATCGTTCGCCTCCATCTTTTG 2368 Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGAC 61586 ||||||||| || ||| | ||||| || |||| Sbjct 2367 GTTGAAGAAGCGCGGATTGATGCCAGGATTGAC 2335 >seq1864 Length=19213 Score = 98.7 bits (108), Expect = 8e-16 Identities = 136/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 9157 TTTACGGTTTCCAGTGGCGACATTTCGGTGCTCGGTACATCGATTGTCATACGGACTATA 9216 |||| || ||||||||| |||||||||| || ||| | |||||||| || ||||| | Sbjct 14346 TTTATGGATTCCAGTGGAGACATTTCGGAGCGAAATACGTGGATTGTCACACAGACTACA 14287 Query 9217 CGGGCCAAGGTGTGGATCAGTTGGCGCAATGTATGCATCAGATCCAATATGAGCCGAGTA 9276 | || ||||| || ||||||||||| | || | ||| ||| || | || ||| | Sbjct 14286 CTGGACAAGGAGTCGATCAGTTGGCTGAGGTGATTCGTCAAATCAAAGAGGAACCGGACA 14227 Query 9277 GTCGACGCATGATTATGACTGCCTGGAATCCGAACGAT-TTGGACAAGATGGTATTGCCG 9335 | || | || || ||| | || |||||||| ||| |||| ||| ||||| |||||| Sbjct 14226 GCAGAAGAATCATCATGTCGGCGTGGAATCCATCGGATCTTGGGCAA-ATGGTCTTGCCG 14168 Query 9336 CCATGCCA 9343 || || || Sbjct 14167 CCGTGTCA 14160 >seq126 Length=90294 Score = 93.3 bits (102), Expect = 3e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073 || ||||| ||||| ||||| ||||| || ||||| | ||||||| ||||| ||||| Sbjct 10625 GAGGCGAGATTGCAAACAGCGATCTCATCTGGAGCAGAGTACTCGATGATTTCCGTGCAA 10684 Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133 || || ||| ||||| || | ||||| ||||| |||||||||| |||||| Sbjct 10685 AGGTTGGAGCACTTGATGGTTCCGAGGTTCTGCTGATTTGACTTGCGATTGGCGGCATCC 10744 Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 ||||| | ||||| ||| || ||||| | |||| Sbjct 10745 TTGTAGGTGATGTAAGGAAGACCAGTCTCGATTTGG 10780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397494054961040