Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_031108.1 Length=39640 Score E Sequences producing significant alignments: (Bits) Value seq9821 282 1e-71 >seq9821 Length=1172 Score = 282 bits (312), Expect = 1e-71 Identities = 216/255 (85%), Gaps = 3/255 (1%) Strand=Plus/Plus Query 8821 GGCTCATCCCAATCGGGGGTGTAGGAGTTGGGGTCTGAAGCCGCCGGTCTCGAGCAGGCT 8880 ||||||||| | || |||||||| | | ||||||||||||||||||||||||||| Sbjct 867 GGCTCATCCGATTCCAGGGTGTAG---TCGCGGTCTGAAGCCGCCGGTCTCGAGCAGGGA 923 Query 8881 TCGGGCGATGTAGTTGGTCAGGTTGCGGAACCCGAGTGCGGAGCCGCGCAGGTGTTCGAG 8940 | ||||||||||||||| ||||||||||||||||| || |||||||| ||||||||||| Sbjct 924 CCTGGCGATGTAGTTGGTGAGGTTGCGGAACCCGAGGGCTGAGCCGCGGAGGTGTTCGAG 983 Query 8941 CCGTCCGTTGAGCGCCTCGGTCGGCCCGTTGCTGGTGCCGGGTCGTTCGAAGTAGGCGAG 9000 ||| ||||||| |||||| || |||||||||||||||||||| || ||||||||||| || Sbjct 984 CCGGCCGTTGATCGCCTCCGTAGGCCCGTTGCTGGTGCCGGGGCGGTCGAAGTAGGCCAG 1043 Query 9001 CACGTCAGCGGCTCGCTTCTTCAGGGTCCGGCCCAGGGTGGTGAGCTCGGTGAGCACCTT 9060 |||||| ||||| |||||||||| ||||||||||| ||| ||| |||| | ||| | Sbjct 1044 CACGTCGGCGGCCCGCTTCTTCAACGTCCGGCCCAGCGTGATGACCTCGATCAGCGCGGC 1103 Query 9061 GGGGACGCCGGCGCT 9075 ||||||||| |||| Sbjct 1104 CGGGACGCCGTCGCT 1118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126703434087364