Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq253 89.7 2e-12 >seq253 Length=65330 Score = 89.7 bits (98), Expect = 2e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 364423 ACCAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCC 364482 |||||| ||||||||||| |||| || | |||| ||||| ||||| || || | || Sbjct 31022 ACCAATTGTCATACGAGATGGAACGGCGTGAGGATTGATAATGATATCTGGAGTAAGTCC 30963 Query 364483 GTCAGCGGTAAAGGGCATATCTTCGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGC 364542 || || || || ||||||||||| | || |||| ||| || || |||||||| | Sbjct 30962 TTCCGCAGTGAAAGGCATATCTTCTTGTCGATACATGATACCCATCGTACCCTTTTGACC 30903 Query 364543 ATAGCGAGAAGCAAACTTGTCGCCAAT 364569 || ||||| || |||||||| || || Sbjct 30902 ATGACGAGAGGCGAACTTGTCACCGAT 30876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884517845217073