Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq199 259 7e-67 >seq199 Length=2081 Score = 259 bits (286), Expect = 7e-67 Identities = 213/254 (84%), Gaps = 8/254 (3%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| |||||||||||||||||||||||||| || |||| | || || |||| Sbjct 480 CTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACGTCCACTTGC-GTGTTAGCAC 538 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCT-- 118 |||||||||||||||||||||||||||||||| || |||||||| ||||||| || Sbjct 539 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCACTGGTCTCTGCGGCCACCACACCCTTT 598 Query 119 --CAA-CACGTCGTTCACCAGCAG-TGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTT 174 ||| || || | | | ||| | |||| ||||||||||||||||||||||| |||||| Sbjct 599 CCCAAGCAAGTTGGT-ATAAGCGGATGGCCCCCCTTCTCCCGAAGTTACGGGGGCATTTT 657 Query 175 GCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGT 234 ||||| |||||| ||||| ||| | ||| | ||||||||||||||||||||||||||| Sbjct 658 GCCGAGTTCCTTCACCACGATTCTCTCGATCTCCTTAGTATTCTCTACCTGACCACCTGA 717 Query 235 GTCGGTTTACGGTA 248 |||||||| |||| Sbjct 718 GTCGGTTTGGGGTA 731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694395526545