Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq199 338 2e-90 >seq199 Length=2081 Score = 338 bits (374), Expect = 2e-90 Identities = 331/419 (79%), Gaps = 7/419 (2%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | || |||||||||||||||||| | ||||||||||| | ||||| Sbjct 297 GCATCTTCACGGGGAATTCAATTTCACTGAGTCTGCGTTGGAGACAGCGGGGAAGTCGTT 356 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 357 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTA 416 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCG--CGTTAGCTAACCCCA 190 | ||||| ||||||||||| ||||||| || | ||||||| || |||||| | Sbjct 417 TAGTTACCACCGCCGTTTACTGGGGCTTAAATTCAAAGCTTCGACCGAAGTCTAACCTCT 476 Query 191 TCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGC 250 | |||||||||| ||||||||||||||||| || ||||||||||||| |||||| || Sbjct 477 CCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACGTCCACTTGCGTGTTAGC 536 Query 251 AGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGC- 309 | | ||||||||||| ||||||||||| | ||||| ||| || || || | Sbjct 537 ACGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCACTGGTCTCTGCGGCCACCACACCCT 596 Query 310 TTACGGAGCAAG-TCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 || | |||||| | | | | | ||| | ||||||||||||||||||| | | || Sbjct 597 TTCCCAAGCAAGTTGGTATAAGCGGA-TGGCCCCCCTTCTCCCGAAGTTACGGGGGCATT 655 Query 369 TTGCCTAGTTCCTTC-CCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| ||||||||| || ||| ||||||| | | |||| |||||||||||| ||||| Sbjct 656 TTGCCGAGTTCCTTCACCACGA-TTCTCTCGATCTCCTTAGTATTCTCTACCTGACCAC 713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260791615680