Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq199 735 0.0 >seq199 Length=2081 Score = 735 bits (814), Expect = 0.0 Identities = 528/602 (88%), Gaps = 15/602 (2%) Strand=Plus/Plus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||||| | |||||| |||||| ||||||||| || |||||||||||| |||||||||| Sbjct 1478 TCGACTATGAAGCTTA-TCCCCCACAGTCTCACTGCTGCGCTCTCACTTACCGGCATTCG 1536 Query 61 GAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGT-GCTCTACCTCC 119 |||||| | ||| || |||| ||||| || ||| | | ||||||||| ||||||||||| Sbjct 1537 GAGTTTAGCTGACGTCAGTAACCTTGTAGGGCCCATCGGCCATCCAGTAGCTCTACCTCC 1596 Query 120 GGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAG 179 || ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1597 GGCAAGAAACACGCAACGCTGCACCTAAATGCATTTCGGAGAGAACCAGCTATCACGAAG 1656 Query 180 TTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGT 239 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1657 TTTGATTGGCCTTTCACCCCTATCCACAGCTCATCCCCTCAGTTTTCAACCTAAGTGGGT 1716 Query 240 TCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTT 299 ||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||| Sbjct 1717 TCGGTCCTCCACGACGTCTTACCGTCGCTTCAACCTGGCCATGGATAGATCACTTCGCTT 1776 Query 300 CGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCC 359 ||||||| | | ||| ||| | |||||||||| ||||||||||||||||||||||||| Sbjct 1777 CGGGTCTAGGACATGCGACTGAATCGCCCTATTCAGACTCGCTTTCGCTACGGCTACCCC 1836 Query 360 ACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCC 419 ||||||||||||||||| ||| | ||| ||||||||||||||||||||||||||||||| Sbjct 1837 ACACGGGTTAACCTCGCCACATATCGCTAACTCGCAGGCTCATTCTTCAAAAGGCACGCT 1896 Query 420 GTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGT 479 ||||| ||||| |||| ||||| |||||||||| ||| | |||||||||| Sbjct 1897 GTCAC-----ACCTACAAGG-----GTGCTCCAACGGATTGTAAGCAAACGGTTTCAGGT 1946 Query 480 ACTATTTCACTCCCC-GCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTA 538 ||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||| Sbjct 1947 ACTATTTCACTCCCCTCCCGGGGGTACTTTTCACCTTTCCCTCACGGTACTAGTCCGCTA 2006 Query 539 TCGG-TCACCAAGGAGTATTTAGGCTTAACGGGTGGTCC-CGCCAGATTCACACGAAATT 596 |||| ||| | |||||||||||||||| | |||||||| | |||||||||||| ||| Sbjct 2007 TCGGTTCATCTGGGAGTATTTAGGCTTATCAGGTGGTCCTGGACAGATTCACACGGGATT 2066 Query 597 TC 598 || Sbjct 2067 TC 2068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817587912960