Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq199 210 5e-52 >seq199 Length=2081 Score = 210 bits (232), Expect = 5e-52 Identities = 306/414 (74%), Gaps = 14/414 (3%) Strand=Plus/Plus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| || || | |||| |||| ||| |||||||||||||| | Sbjct 1675 CCTATCCACAGCTCATCCC-CTCAGTTTT-CAACCTAAGTGGGTTCGGTCCTCCACGACG 1732 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||| ||| ||||||| |||| ||||||||| | | || |||||||| | Sbjct 1733 TC-TTACCGTCGCTT-CAACCTGGCCAT-GGATAGATCACTTCGCTT-CGGGTCTAGGAC 1788 Query 124 CCAGCGACTAGA-CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAA 182 |||||| | ||||||| | ||||||||||| ||||||| || ||| | ||| | | Sbjct 1789 AT-GCGACTGAATCGCCCTATTCAGACTCGCTTT-CGCTACGGCTACCCCACACGGGTTA 1846 Query 183 GCTTTGCCACTGAAAA-TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCAC-CCAA 240 | | ||||| | ||| |||| | | |||| | ||||||| |||| ||||| || | Sbjct 1847 ACCTCGCCACATATCGCTAACTCGCAGGCTCATTCTTCAAAAGGCACGCTGTCACACCTA 1906 Query 241 CAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTC 300 ||| | | ||||| || | ||||| ||| ||||||||||| |||||||||||||||| | Sbjct 1907 CAAGG-GTGCTCCAACGGATTGTAAGCAAACGGTTTCAGGTACTATTTCACTCCCCTCCC 1965 Query 301 CGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGG-TCAGTCAGTAGTAT 359 ||||| |||||| ||||||||||||||||||||| | ||||||| ||| | ||||| Sbjct 1966 GGGGGTACTTTTCACCTTTCCCTCACGGTACTAGTCCGCTATCGGTTCATCTGGGAGTAT 2025 Query 360 TTAGCCTTGGAGGATGGTCC-CCCCATATTCAGACAAAGTTTCTCGTGCTCCGT 412 |||| ||| | |||||| || ||||| || ||||||| || |||| Sbjct 2026 TTAGGCTTATCAGGTGGTCCTGGACAGATTCACACGGGATTTCTCGGGCCCCGT 2079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241591743360