Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq199 251 2e-64 >seq199 Length=2081 Score = 251 bits (278), Expect = 2e-64 Identities = 352/484 (73%), Gaps = 10/484 (2%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGA--CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| ||| ||||||| ||||||| | |||||||||| | |||||||||| ||| Sbjct 1817 CGAGTCTGAATAGGGCGATTCAGTCGCATGTCCTAGACCCGAAGCGAAGTGATCTATCCA 1758 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 |||||||| ||||| |||||| ||| | |||||| ||||||||||| | |||||||| Sbjct 1757 TGGCCAGGTTGAAGCGACGGTAAGACGTCGTGGAGGACCGAACCCACTTAGGTTGAAAAC 1698 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | |||||||||||||||| |||||||||||||| || ||||||| | |||||||||||| Sbjct 1697 TGAGGGGATGAGCTGTGGATAGGGGTGAAAGGCCAATCAAACTTCGTGATAGCTGGTTCT 1638 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC-CATCGGGGGTAGAGC-ACTGTTA 237 |||||||| |||||||| || | || | | ||| |||||||| |||| | Sbjct 1637 CTCCGAAATGCATTTAGGTGCAGCGTTGCGTGTTTCTTGCCGGAGGTAGAGCTACTG-GA 1579 Query 238 TGGCTAGGGGGTCATTGCGACTTACCAAACCATTGC-AAACTCCGAATGCGCATCAGTTT 296 |||| | || | | | | | | || || ||||||||||||| | ||| Sbjct 1578 TGGC-CGATGGGCCCTACAAGGTTACTGACGTCAGCTAAACTCCGAATGCCGGTAAGTGA 1520 Query 297 TACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGAC 356 | ||| | |||||| |||| | |||| | | | ||||||| || || || || Sbjct 1519 GAGCGCAGCAGTGAGACTGTGGGGGATAAGCTTCATAGTCGAGAGGGAAACAACCCAGAT 1460 Query 357 TATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGAC 416 | || |||||| ||| || | ||||||| || || || || ||||| ||| Sbjct 1459 CACCAACTAAGGTCCCAAAGCGCGTGCTAAGTGGAA--AAGGATGTGGAGTTGCTGTGAC 1402 Query 417 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 476 | | |||| |||||||| |||||||||| | || ||||||||||||| |||||||| || Sbjct 1401 AACCAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGCTCACTGGT 1343 Query 477 CGAG 480 | || Sbjct 1342 CAAG 1339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689588764160