Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq199 417 3e-114 >seq199 Length=2081 Score = 417 bits (462), Expect = 3e-114 Identities = 402/511 (79%), Gaps = 10/511 (2%) Strand=Plus/Plus Query 54 GATTGCCAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACC 113 |||| || ||| ||||| ||| | | ||||||||||||| ||| ||||| | ||| Sbjct 20 GATTTCCGACCGTTCTGAGCCTACCATCGCGCGCCTCCGTTACTCTTTAGGAGG-CGACC 78 Query 114 GCCCCAGTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGA 173 |||||||| ||||||||||||| ||| |||| |||| ||| | ||||| |||||| Sbjct 79 GCCCCAGTCAAACTACCCACCATACACGGTCCTGGACCCGGATAACGGGCCGCAGTTAGA 138 Query 174 TATCCACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCA 233 ||||| | | || |||||||||||| | |||||||||| || ||| | || Sbjct 139 CATCCATATAGATAAGGGTGGTATTTCAAGGATGACTCCACAATGGCTGGCGCCACTGCT 198 Query 234 TCATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGA 293 ||| ||||| |||||||||||||||| || ||||||||| | |||||||||| | Sbjct 199 TCAAAGTCTACCACCTATCCTACACATGTCGACACGAATGCCAGTGTAAAGCTATAGTAA 258 Query 294 AGGTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAAT 352 |||| | |||||||||| |||| |||| ||| | ||||||| || | | | |||| Sbjct 259 AGGTGCACGGGGTCTTTCCGTCTAACCGCAGGAACCCCGCATCTTCACGGGGAATTCAAT 318 Query 353 TTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAA 412 ||||| | | ||| | | |||||||| ||| ||||||||||||||||||||||||||||| Sbjct 319 TTCACTGAGTCTGCGTTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAA 378 Query 413 CTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTG 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 379 CTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTG 438 Query 473 GGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCC 532 |||||| |||| || || || | | || || || ||||||||||||||| Sbjct 439 GGGCTTAAATTCAAAGCTTC-GAC-CGAAGT------CTAACCTCTCCTCTTAACCTTCC 490 Query 533 AGCACCGGGCAGGCGTCAGTCCGTATACCTC 563 |||||||||||||||||||||||||||| || Sbjct 491 AGCACCGGGCAGGCGTCAGTCCGTATACGTC 521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702388679040