Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq626 203 3e-47 >seq626 Length=20921866 Score = 203 bits (224), Expect = 3e-47 Identities = 434/646 (67%), Gaps = 2/646 (0%) Strand=Plus/Minus Query 66286 TGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAA 66345 ||| |||| | ||| ||||||||||||||||| ||| | || || || ||| || Sbjct 6579845 TGGGCACTCGCATGGGCACATCAGCGACCAATCCTGATCTTTCTCGACGCGCTTCATGAA 6579786 Query 66346 TAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTG 66405 || || || | |||||| || ||| ||||| || || || | ||| || ||| Sbjct 6579785 GAGGTCCGGCACCCAGAGAGCCAGGAACAGATCACGAGCACGCTCCTCTTCTGGACCGGT 6579726 Query 66406 ATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGC 66465 || ||||| | ||| |||||| |||| ||||| |||||||| || ||||||||||| Sbjct 6579725 GTTCTTGCGAAGAGCGACGAACTCGAAGACATCGGCGTGCCATGGCTCAAGGTAGATGGC 6579666 Query 66466 GAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGAC 66525 ||| | || || ||| || || || || || || ||||| |||||| |||| Sbjct 6579665 GAAAGCTCCTGGGCGCTTGTTTCCTCCCTGATCAACATAACGAGCTGTGTTGTTGTAGAC 6579606 Query 66526 ACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCG 66585 ||| | |||||| | |||||| || || | |||||||| ||| | ||| |||||| Sbjct 6579605 ACGAAGCATCGGGATGAGCCCATTGGAAGTTCCATTGGTTCCGGCAATGACAGATCCTGT 6579546 Query 66586 TGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA 66645 || || || | ||| || || || ||||| || ||||| ||||||||||| |||||| Sbjct 6579545 AGCGCGAATCTTGTGGACGTTGAGTCCAATTCCTCCGGCACTCTTCGAGATGAGAGCACA 6579486 Query 66646 ATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA 66705 | || || | | || ||| ||| || || | | || || || ||| |||| Sbjct 6579485 CTGCTTCAAGGTATCGTAGATTCCGAGAATCGAATCCTCGCTCATTGTGAGCAGGAAGCA 6579426 Query 66706 TGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAA 66765 || | || || ||| | | |||||| || || | ||| ||||| | Sbjct 6579425 CGACGACATCTGTGGGCGACATGTTCCAGAGTTGAAGAGAGTTGGGGAAGCATGCGTCAT 6579366 Query 66766 GTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAAT 66825 ||| | ||||| |||||||||||||||| |||| | |||||| || || ||||| Sbjct 6579365 GTATCGCTCCGACATCAGATTGTACGTCTCGATGGCAGCTTGAATGTTCTCTCCGTGAAT 6579306 Query 66826 CCCGAGTGC-ACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATAT 66884 |||| || ||| ||||||| | | ||| ||||| || || | | ||||| | Sbjct 6579305 ACCGATGGCGACA-CGCATCAACATCTGTTGTGGCCGCTCAACGACTTCTTTGTTGATCT 6579247 Query 66885 GCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTA 66930 || | || || || || || ||||||| || ||||| | ||| Sbjct 6579246 TCAGAAGATACGAACGCTCAAGAGTCTTGAATCCGAAGTAAGTGTA 6579201 Score = 134 bits (148), Expect = 1e-26 Identities = 238/336 (71%), Gaps = 12/336 (4%) Strand=Plus/Plus Query 61258 GAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATT 61317 ||||| ||| || | || ||| | ||||||||||| |||| |||||||| ||||| || Sbjct 3164678 GAACGCTTCTCGAATGAAGTGAAGGTGTCGGAGGCCCGTTTCTTCTACGGATTCCAAATC 3164737 Query 61318 GCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAG 61377 ||||| |||||| | || |||||||||||| ||||| || ||||| ||| | || Sbjct 3164738 GCCATCGAGAATATTCATTCGGAGATGTACTCGAAGCTCATTGAGACGTATATCCGTGAT 3164797 Query 61378 CGGGCGGAACGTGA-ACGATTGTTCAATGCCATCGAGACGA--TACCGGCGGTGAAGCGG 61434 | |||| ||| | || || ||||| |||||| ||| | | | ||| | Sbjct 3164798 GAGACGGAGCGTCACACTCTT-TTCAACGCCATC--TTCGAATTCGAGTTTATCAAGAAG 3164854 Query 61435 AAAGCGGATTGGGC-CTTCAATTGGATCACCAGTACA--ACGGCTACATTTGGTGAACGA 61491 || || || ||||| |||| ||||| ||| ||| | || | || | |||||| Sbjct 3164855 AAGGCCGACTGGGCTCTTC-GCTGGAT-TTCAG-ACAAGAAAGCGTCGTTCGCCGAACGA 3164911 Query 61492 TTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTT 61551 | | || || || | ||||||||| | || ||||| |||||||| ||| | ||||| Sbjct 3164912 CTCATCGCTTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGATCGTTCGCCTCGATCTTC 3164971 Query 61552 TGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACC 61587 ||| | ||||| |||||||||||||| ||| ||||| Sbjct 3164972 TGGCTCAAGAAGCGTGGACTTATGCCGGGTTTGACC 3165007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397564777835600