Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq625 91.5 2e-13 >seq625 Length=33334924 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 162648 AGGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACT 162707 ||||||||| |||||||| ||||||||| || || | || ||| | || | Sbjct 12718619 AGGAGAGACTTTCGTCACTCGCAAGATCACTCGTTCCGTCGCCAAGATTTCCCTTGGCCA 12718560 Query 162708 CCAAAGTGATCTAC--AACTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAA 162765 ||| ||| | |||| |||||||| | |||| ||||| ||||||||||| | | Sbjct 12718559 ACAAGA--ATCCATTGAACTCGGAAACCTGAGCGCCCTTCGTGATTGGGGACACGCAAGA 12718502 Query 162766 GACTACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATC 162825 || ||||| ||||| |||||| || ||||| || || |||||||||| |||||| Sbjct 12718501 GAGTACGTCGAGGCAATGTGGAGAATTCTTCAACACGATTCCCCAGATGATTTTGTGATT 12718442 Query 162826 GCAACTGGTGAGCAGT 162841 || ||||| | |||| Sbjct 12718441 GCCACTGGAAAACAGT 12718426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691453452245400