Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cylicostephanus_20goldi_20[genbank_20GCA_5F000951155.1_202014-10-12] 154,509 sequences; 173,362,437 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq7671 269 9e-70 seq72248 212 2e-52 >seq7671 Length=2526 Score = 269 bits (298), Expect = 9e-70 Identities = 356/484 (74%), Gaps = 10/484 (2%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGAC--AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| || |||||| ||||| | |||||| |||||||| |||| ||| ||| Sbjct 1292 CGAGTCTTAAGAGGGCGTTTGAGTCGTATGTCGTAGACGCGAAACCAGGTGAGCTATCCA 1233 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 ||| |||| ||||| | ||||| || | |||||| ||||||||||| | ||||||| Sbjct 1232 TGGGCAGGCTGAAGCGGGGGTAAGACTTCGTGGAGGGCCGAACCCACTTAGGTTGAAATC 1173 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | ||||||||| |||||| |||| |||||||||||| ||||| |||| ||| || ||||| Sbjct 1172 TGAGGGGATGACCTGTGGATAGGAGTGAAAGGCTAATCAAACCTGGAGATATCTCGTTCT 1113 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGT-ATCACCATCGGGGGTAGAGCACTGTTAT 238 | |||||| |||||| ||||| ||| | ||| |||| |||||||||||| || Sbjct 1112 CCCCGAAATAGCTTTAGGGCTAGCCTCGAGTGTTTACCGTCGGAGGTAGAGCACTG-AAT 1054 Query 239 GGCTAGGGGGTCATTGCGACTTACCAA-ACCATTGCAAACTCCGAATGCGCATCAGT-TT 296 | |||| | | | | |||||| || | |||||||||||||| | | || Sbjct 1053 GAACGCGGGGGCCTCACCGCCTACCAACTTCAAT-CAAACTCCGAATGC-CGACGGTCCA 996 Query 297 TACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGAC 356 | | ||||||| || |||| | |||||| | ||| | | ||| || | || || Sbjct 995 GAACTCGGGAGTCAGAACATGTGGGCTAAGCTGTGTGTTCAAAAGGGAAACAGCCCAGAT 936 Query 357 TATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGAC 416 | ||||||| |||||||| ||||||| | || || || | |||| |||| Sbjct 935 CGCCCGCTAAGGTCCCGAAATCCATGCTAAGTGGTA--AAGGATGTGCGTTTGCCCAGAC 878 Query 417 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 476 | | ||||||||||||| |||||||||||||||||||||||||||||| |||||||| || Sbjct 877 AACCAGGATGTTGGCTTAGAAGCAGCCATTCATTTAAAGAGTGCGTAATAGCTCACTGGT 818 Query 477 CGAG 480 |||| Sbjct 817 CGAG 814 >seq72248 Length=923 Score = 212 bits (234), Expect = 2e-52 Identities = 240/316 (76%), Gaps = 8/316 (3%) Strand=Plus/Minus Query 168 ATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTAT-CACCATCGGGGGTA 226 ||||||||||||| |||||| |||||||||||| ||||| | || || | |||||||| Sbjct 923 ATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAATTCATCTCCGGGGGTA 864 Query 227 GAGCACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC 286 |||||||||| ||| |||||||||| ||||||||||| || |||||||| ||||| | Sbjct 863 GAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATAC 804 Query 287 GCATCAGTTTTACCGCGGGAG--TGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAG 344 | | ||| | |||||| | ||| ||||||||| |||||| ||||| Sbjct 803 CGGAGAATGTTATCACGGGAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAGAGGGA 746 Query 345 AAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCT 404 || || || ||| ||||||||| ||| || | | | ||||| | ||||| || Sbjct 745 AACAACCCAGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGA--AACGATGTGG 688 Query 405 GATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAA 464 || || ||||||| ||||||||||||| |||||||||| ||||||||||| |||||| Sbjct 687 GAAGGCCCAGACAGCCAGGATGTTGGCTTAGAAGCAGCCA-TCATTTAAAGAAAGCGTAA 629 Query 465 CAGCTCACTAGTCGAG 480 |||||||| |||||| Sbjct 628 TAGCTCACTGGTCGAG 613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1686989415936