Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1054 149 9e-34 seq377 116 6e-24 >seq1054 Length=16975 Score = 149 bits (164), Expect = 9e-34 Identities = 183/240 (76%), Gaps = 9/240 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| ||| |||||||||||| ||| |||||||| |||||||| | ||||||||||||| | Sbjct 3511 GTATAAATGGCAGGGACGTAATCAGCGCGAGCT-GATGACTCACACTTACTAGGAATT-C 3568 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATT 119 |||||| || | || |||| |||| |||||| ||||| | || ||| | | || Sbjct 3569 CTCGTTCAAAAGGAATAATTACAATTCCTTATCCCGGTCACGGAAGATATTCAACGGTTT 3628 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| |||| |||| | || | || | | || | ||| |||||||||||||| Sbjct 3629 ACCAATACCTTTCGGTAATGGACA-AGCCA-GCTGTTTCTTTCATTGTAGCGCGCGTGCA 3686 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 |||| |||||||||||||||||||||||||||||| | ||||| || |||| | ||||| Sbjct 3687 GCCCCGAACATCTAAGGGCATCACAGACCTGTTATCG-CTCAATCT--CGTGCGGCTAAA 3743 >seq377 Length=118935 Score = 116 bits (128), Expect = 6e-24 Identities = 144/188 (77%), Gaps = 7/188 (4%) Strand=Plus/Plus Query 29 GAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGAT 88 ||||| |||||||| | ||||||||| ||| ||||||| |||| || |||| |||| Sbjct 75126 GAGCT-GATGACTCACACTTACTAGGGATT-CCTCGTTCAAGAGGAATAATTACAATTCC 75183 Query 89 CTATCCCCATCACG-ATGAAATTTCAAAGATT-ACCCGGACCTGTCGGCCAAGGTGATAG 146 ||||||| ||||| | || ||| ||| |||| | | | |||| |||| | || | || Sbjct 75184 CTATCCCGGTCACGGAAGATATT-CAACGATTTATCAGCACCTTTCGGTAATGGACA-AG 75241 Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 || | || | || |||||||||||||| |||| ||||||| |||||||||||||| Sbjct 75242 -CTAGCTGTTTCTTCCATTGTAGCGCGCGTGCAGCCCCGAACATCCAAGGGCATCACAGA 75300 Query 207 CCTGTTAT 214 |||||||| Sbjct 75301 CCTGTTAT 75308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751947861255