Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1513 109 1e-21 seq377 82.4 1e-13 seq1340 77.0 6e-12 >seq1513 Length=23628 Score = 109 bits (120), Expect = 1e-21 Identities = 163/226 (72%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGA 133 ||| ||||||| ||| ||||||| ||||| || || |||||| |||| | | |||| Sbjct 23405 TTTTCTTTGAATAAACTAGAGTGCTCAAAACAAGCGTTTGCTTGAATTGTTGATCATG-- 23462 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 ||||||| ||||| | ||||||||||| |||||| | | || | ||||| |||| Sbjct 23463 --AATAGAAGAGGACTT-CGGTTCTATTTA-TTGGTT-CAGGAACTGGAATAATGGTTAA 23517 Query 194 TAGGGATAGT-CGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 |||| | | |||||| | |||||| || |||||| |||||| |||| | Sbjct 23518 GGGGGACAATTCGGGGGCATTCGTATTCCTGCGTGAGAGGTCAAATTCGTGGACCACAGG 23577 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAAT 298 |||| ||| ||||||||||| ||||| |||| ||||||||| Sbjct 23578 GAGACGCCCTAAAGCGAAAGCGTTTGCCAAGAATGTCTTCATTAAT 23623 >seq377 Length=118935 Score = 82.4 bits (90), Expect = 1e-13 Identities = 165/238 (69%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGA 133 |||| |||||| ||||||||||| ||||| | || |||| | |||| | | ||| | Sbjct 75928 TTTATTTTGAATAAATTAGAGTGCTCAAAATAAGCGTTTGGTTGAATCGTTGATTATGAA 75869 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 ||||||||| ||||| | || |||| ||| |||| ||| | | | ||||| |||| Sbjct 75868 ATAATAGAAGAGGAC-TTTGGCTCTA-TTTATTGG-TTCAGGAATTGGAATAATGGTTAA 75812 Query 194 TAGGGA-TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 ||||| | ||| ||| | |||| | | ||||||||||||| | | | Sbjct 75811 GAGGGACAATTCGAGGGCATTCGTATCCCTGCGCGAGAGGTGAAATTCGTTAACAGCAAG 75752 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 | || ||| |||||||| || ||||| |||| ||||||||||| || ||||| Sbjct 75751 GAAACACTCTAAAGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCA-AGATCGAAA 75695 >seq1340 Length=9846 Score = 77.0 bits (84), Expect = 6e-12 Identities = 72/89 (81%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGA 133 ||||| ||||| ||||||||||| ||||| || || |||||| |||| | || | ||||| Sbjct 704 TTTACCTTGAATAAATTAGAGTGCTCAAAACAAGCATTTGCTTGAAT-CGTTGGAATGGA 762 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTT 162 ||||||||| || || | || ||| |||| Sbjct 763 ATAATAGAAAAGTAC-TTCGCTTCAATTT 790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915134499136