Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq5855 138 5e-30 seq1447 136 2e-29 seq351 109 2e-21 seq211 82.4 3e-13 >seq5855 Length=1115 Score = 138 bits (152), Expect = 5e-30 Identities = 106/126 (84%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||| |||||||||||||||||||||||||||| ||| ||||| |||| Sbjct 324 AGAGCGTACAGGTTGCGACCCGAAAGATGGTGAACTATGCCTGAGCAGGATGAAGTCAGA 383 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||||||| |||||| || | |||||||| ||||||||||||||| | | || ||| Sbjct 384 GGAAACTCTGATGGAGGTCCGTATCGGTTCTGACGTGCAAATCGATCGATAGACTTAGGT 443 Query 674 ATAGGG 679 |||||| Sbjct 444 ATAGGG 449 >seq1447 Length=9740 Score = 136 bits (150), Expect = 2e-29 Identities = 108/130 (83%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||| |||||||||||||||||||||||||||| ||| ||||| |||| Sbjct 288 AGAGCGTACAGGTTGCGACCCGAAAGATGGTGAACTATGCCTGAGCAGGATGAAGTCAGA 229 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||||||| |||||| || | ||||| || ||||||||||||||| | | || ||| Sbjct 228 GGAAACTCTGATGGAGGTCCGTATCGGTTATGACGTGCAAATCGATCGATAGACTTAGGT 169 Query 674 ATAGGGGCGA 683 ||||| |||| Sbjct 168 ATAGGAGCGA 159 Score = 82.4 bits (90), Expect = 3e-13 Identities = 111/154 (72%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| ||| |||||||| ||| | || | |||| ||| ||||| ||||||| Sbjct 699 GAGTCGGATTGCTTGAAAATGCAGCCTTAAGTTGGTGATAAACTTCATCTAAGGCTAAAT 640 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAG---TGATCGAAAGATGAAAAGCACTTTG 156 |||| | | |||||| |||| || | ||| ||||| | |||| |||||| Sbjct 639 ATTGACGCAAATTTGATAGCAAACAACAAGTGCTATGAAGGAAAGTTACAAAGAACTTTG 580 Query 157 GAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAA 190 | |||||||| || | ||||||||| |||||| Sbjct 579 AAGAGAGAGTTCAAGAAAACGTGAAATCGTTGAA 546 >seq351 Length=124363 Score = 109 bits (120), Expect = 2e-21 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| || |||||||| ||| | || | |||| ||| ||||| ||||||| Sbjct 123887 GAGTCGGGTTGCGTGAAAATGCAGCCTTAACTTGGTGATAAACTTCATCTAAGGCTAAAT 123946 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||| | || ||||||| ||||||| |||| |||| || |||| |||||| | Sbjct 123947 ATTGACGCGAATTCGATAGCATACAAGTACTGTGAAGAAAAGTTGCAAAGAACTTTGAAG 124006 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||||| ||||| |||| || Sbjct 124007 AGAGAGTTCAAGAGAACGTGAAATCTTTGAAGTGGAAACG 124046 >seq211 Length=231949 Score = 82.4 bits (90), Expect = 3e-13 Identities = 88/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGAT-AGCGCACAAGTAGAGTGATCGAAAGATG 144 |||||| ||||||||||| | || |||| ||| ||||||| |||| ||||| || Sbjct 231942 TTCTAAGGCTAAATATTGACGCGAATTCGATAAGCAAACAAGTACTGTGAAGGAAAGTTG 231883 Query 145 AAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||| |||||| | |||||||| || || ||||||||| ||||| |||| || Sbjct 231882 CAAAGAACTTTGAAGAGAGAGTTCAAGAGAACGTGAAATCTTTGAAGTGGAAACG 231828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079846482350