Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq341 152 8e-35 seq377 149 1e-33 seq1054 87.8 3e-15 >seq341 Length=135792 Score = 152 bits (168), Expect = 8e-35 Identities = 180/240 (75%), Gaps = 13/240 (5%) Strand=Plus/Minus Query 30 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGC 89 |||| |||| |||||||| ||||||||||||||||||| | || |||| || || ||| Sbjct 306 GTGCAGCCCCGAACATCTGAGGGCATCACAGACCTGTTGTCGC-TCAATCT-CCTGCGGC 249 Query 90 TGGAAGCCAATAGTCCCTCTAAGAAG----CCAGCCACCAACCATAG----TCGATGGGG 141 | | || | | ||||||||||| | | || | | || || || | Sbjct 248 TAAACACCGCTTATTCCTCTAAGAAGTAGACTGGACATATTCGAGAGAAAATCAATCCAG 189 Query 142 CTA---TTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCA 198 | | |||||||| || || ||| ||||||| ||||| ||||||||||||| ||||| Sbjct 188 CCACTGTTTAGCAGACTAGAGTTTCGCTCGTTATTGGAATAAACCAGACAAATCGCTCCA 129 Query 199 CCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||| ||| |||| |||||||||| |||||||||| Sbjct 128 CCAACTAAGAACGGCCATGCACCACCAACCACCAAATCGAGAAAGAGCTTTCAATCTGTC 69 >seq377 Length=118935 Score = 149 bits (164), Expect = 1e-33 Identities = 167/221 (76%), Gaps = 17/221 (8%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || |||||||||||||| |||| ||||||| |||||||||||||||||||||| | ||| Sbjct 75256 CATTGTAGCGCGCGTGCAGCCCCGAACATCCAAGGGCATCACAGACCTGTTATCAC-TCA 75314 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGA 136 | || | ||||| | || | ||| ||||||||| || | | |||| |||| Sbjct 75315 ATCT-CGTGCGGCTGAACACCGCTTATCCTTCTAAGAAGT-AGACTGGA--CATATTCGA 75370 Query 137 TGGGG------------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184 || |||||||||||| || |||||| ||||||||||||| ||| Sbjct 75371 AAGGAAAAATCTAGCCACTATTTAGCAGGCTAGAGTCTCGCTCGTTATCGGAATAAACTT 75430 Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225 ||||||| |||||||||||||||||||||||||||||||| Sbjct 75431 GACAAATTGCTCCACCAACTAAGAACGGCCATGCACCACCA 75471 >seq1054 Length=16975 Score = 87.8 bits (96), Expect = 3e-15 Identities = 59/65 (91%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| |||||||||||||| |||| |||||||||||||||||||||||||||||| | ||| Sbjct 3668 TCATTGTAGCGCGCGTGCAGCCCCGAACATCTAAGGGCATCACAGACCTGTTATCG-CTC 3726 Query 76 AAACT 80 || || Sbjct 3727 AATCT 3731 Score = 84.2 bits (92), Expect = 3e-14 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 198 ACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 |||||||||||||||||||||||||||| ||| |||| |||||||||| ||||||||| Sbjct 3805 ACCAACTAAGAACGGCCATGCACCACCAACCACCAAATCGAGAAAGAGCTTTCAATCTGT 3864 Query 258 C 258 | Sbjct 3865 C 3865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796744755117