Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1054 349 6e-94 seq850 311 1e-82 seq800 306 6e-81 seq747 295 1e-77 seq1725 118 2e-24 seq1601 104 4e-20 seq5101 102 1e-19 seq599 93.3 7e-17 seq6 89.7 9e-16 seq300 87.8 3e-15 seq63 75.2 2e-11 >seq1054 Length=16975 Score = 349 bits (386), Expect = 6e-94 Identities = 246/276 (89%), Gaps = 5/276 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||||| | ||||| || | | | |||| ||||||||||||||||||||||||| Sbjct 6116 TACTAAGCAGGATTACTATCGCAACAATTAGTCAACAGTAGGGTAAAACTAACCTGTCTC 6175 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 6176 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGCG 6235 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6236 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 6295 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 || ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 6296 TGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTACC 6355 Query 240 TCAAA-TTTCGAGGGACT-AAAGGATCGATAGGCCA 273 ||| | || ||| | ||||||||||||||||| Sbjct 6356 AGAAACTATC--TGGATTAAAAGGATCGATAGGCCA 6389 >seq850 Length=28764 Score = 311 bits (344), Expect = 1e-82 Identities = 230/266 (86%), Gaps = 2/266 (1%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| |||||||||| ||||||||||||||| ||||||||||| |||||| ||||||||| Sbjct 26783 GTCAACAGTAGGGTAGAACTAACCTGTCTCACGACGGTCTAAATCCAGCTAACGTTCCCT 26842 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 26843 ATTAGTGGGTGAACAATCCAACGCTCGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCG 26902 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 ||| ||||||||||||||||||||| ||| || |||||||||||||||||||||| |||| Sbjct 26903 ACACCGAAGGATCAAAAAGCAACGTTGCTGTGGACGCTTGGCTGCCACAAGCCAGATATC 26962 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTA-AAGGATCGATA 268 | |||||||||||||||| ||||||| || ||| | ||| || |||||| |||| Sbjct 26963 CGTGTGGTAACTTTTCTGCCACCTCTTACC-AGAATCTATCTGGATTAGAAGGATTGATA 27021 Query 269 GGCCACACTTTCATGGTTTGTATTCA 294 ||||| ||||| ||| |||| ||| Sbjct 27022 AGCCACGCTTTCGCGGTCTGTACTCA 27047 >seq800 Length=35358 Score = 306 bits (338), Expect = 6e-81 Identities = 230/268 (86%), Gaps = 8/268 (3%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||| Sbjct 358 GTCAACAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTTACGTTCCCT 299 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||||||||||| |||||||||||||| ||||| |||||| |||||||||||||||| Sbjct 298 ATTAGTGGGTGGACAATCCAACGCTTGGTGAATTATGCTTCTTAATGATAGGAAGAGCCG 239 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 238 ACATCGAAGGATCAAAAAGCAACGTCGCTGTGGACGCTTGGCTGCCACAAGCCAGTTATC 179 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAA---ATTTCGAGGGACT-AAAGGATCG 265 |||||||||| | |||| ||||||| || || |||| ||| | |||||| || Sbjct 178 ACTGTGGTAACGTATCTGACACCTCTTACCAGAAACTATTT----GGATTAAAAGGAACG 123 Query 266 ATAGGCCACACTTTCATGGTTTGTATTC 293 |||| |||| ||||| || |||| || Sbjct 122 ATAGACCACGCTTTCGCAGTCTGTACTC 95 >seq747 Length=42155 Score = 295 bits (326), Expect = 1e-77 Identities = 209/237 (88%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACC-TGTCT 58 |||||||| ||||||| || | | | |||| ||||||||||| | | | ||||| Sbjct 255 TACTAAGCAGAATTACTATCGCAACAATTAGTCAACAGTAGGGTAACAGTTAGGGTGTCT 196 Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC 118 || |||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 195 CACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCGTGGC 136 Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 ||||||||||||| |||||||||||||||||||||||||||| |||| ||| ||||||| Sbjct 135 GAATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATAAAAAGGCACCGTCGCT 76 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCT 235 ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 75 ATGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCT 19 >seq1725 Length=4837 Score = 118 bits (130), Expect = 2e-24 Identities = 146/195 (75%), Gaps = 5/195 (3%) Strand=Plus/Plus Query 102 ACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161 |||||||||| | || |||||| ||||| |||||| ||||| |||||||| ||| || Sbjct 3264 ACAATCCAACACCTAACGAATTTTGCTTTACAATGATAAGAAGAACCGACATCAAAGAAT 3323 Query 162 CAAAAAGCAACGTCGCTATGAACGCTT-GGCTGCCACAAGCCAGTTATCCCTGTGGTAAC 220 || ||||||||||| |||| || ||| || |||||| ||||||| ||| ||||| Sbjct 3324 CATAAAGCAACGTCACTATTGACACTTAATAAGCTACAAGCAAGTTATCTATGTAGTAAC 3383 Query 221 TTTTCTGGCACCTCTAGCCTCAAA-TTTCGAG-GGACTAAAGGATCGATAGGCCACACTT 278 |||||| ||| ||| ||| ||| || || || |||| |||| ||||| | |||| Sbjct 3384 TTTTCTAACACTTCTTGCCAAAAACCATCTAGATGA--AAAGAATCGGTAGGCTATACTT 3441 Query 279 TCATGGTTTGTATTC 293 ||| || |||| || Sbjct 3442 TCACTGTGTGTACTC 3456 >seq1601 Length=5625 Score = 104 bits (114), Expect = 4e-20 Identities = 104/134 (78%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 103 CAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATC 162 ||||||||| | || | |||| ||||| | |||||| |||||| |||||| ||| ||| Sbjct 3502 CAATCCAACACCTAGCTAATTTTGCTTTGCAATGATAAGAAGAGGTGACATCAAAGAATC 3561 Query 163 AAAAAGCAACGTCGCTATGAACGCTT-GGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221 | ||||||||||| ||||| || ||| || |||||| ||||||| ||| |||||| Sbjct 3562 ATAAAGCAACGTCACTATGGACACTTAATAAGCTACAAGCAAGTTATCTATGTAGTAACT 3621 Query 222 TTTCTGGCACCTCT 235 ||||| |||||| Sbjct 3622 TTTCTAAAACCTCT 3635 >seq5101 Length=1204 Score = 102 bits (112), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 7/193 (4%) Strand=Plus/Minus Query 102 ACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161 |||||||||| || || ||| | ||| | |||||| ||| | |||||||| ||| || Sbjct 1147 ACAATCCAACATCTAGCGGATTTTACTTTGCAATGATAAGAATATCCGACATCAAAGAAT 1088 Query 162 CAAAAAGCAACGTCGCTATGAACGCTTGGCT--GCCACAAGCCAGTTATCCCTGTGGTAA 219 || |||||||||| ||||| || || | | || |||||| ||||||| || |||| Sbjct 1087 CACAAAGCAACGTTACTATGGACACT-GAATAAGCTACAAGCAAGTTATCTATGCAGTAA 1029 Query 220 CTTTTCTGGCACCTCTAGCCTCAAA-TTTCGAG-GGACTAAAGGATCGATAGGCCACACT 277 ||||||| ||| ||| |||| ||| || || || |||| |||| ||||| | ||| Sbjct 1028 CTTTTCTAACACTTCTTGCCTGAAACCATCTAGATGA--AAAGAATCGGTAGGCTATACT 971 Query 278 TTCATGGTTTGTA 290 |||| || |||| Sbjct 970 TTCACTGTGTGTA 958 >seq599 Length=66701 Score = 93.3 bits (102), Expect = 7e-17 Identities = 78/93 (84%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||||| ||||||| || | | | |||| || |||||||||||||||||||||| Sbjct 22939 TACTAAGCAGAATTACTATCGCAACAATTAGTCAACAATAGGGTAAAACTAACCTGTCTC 22998 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 | | |||| |||||||||||||||||||||||| Sbjct 22999 ACGGCGGT-TAAACCCAGCTCACGTTCCCTATT 23030 >seq6 Length=843455 Score = 89.7 bits (98), Expect = 9e-16 Identities = 71/84 (85%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 78 CTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGA 137 ||||||| |||||||||||||| | |||||||| |||| ||||||||||||| |||| Sbjct 750286 CTCACGTACCCTATTAGTGGGT-AGCAATCCAATGCTTGTCGAATTCTGCTTCCCGATGA 750228 Query 138 TAGGAAGAGCCGACATCGAAGGAT 161 |||||||| ||| ||||| |||| Sbjct 750227 GAGGAAGAGTCGATATCGATGGAT 750204 Score = 87.8 bits (96), Expect = 3e-15 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 77 GCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATG 136 |||||||| |||||||||||||| | |||||||| |||| ||||||||| ||| ||| Sbjct 751178 GCTCACGTACCCTATTAGTGGGT-AGCAATCCAATGCTTGTCGAATTCTGATTCCCGATG 751120 Query 137 ATAGGAAGAGCCGACATCGAAGGAT 161 | |||||||| ||| ||||| |||| Sbjct 751119 AGAGGAAGAGTCGATATCGATGGAT 751095 >seq300 Length=182698 Score = 87.8 bits (96), Expect = 3e-15 Identities = 100/133 (75%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 103 CAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATC 162 |||||| || |||| |||| ||||| | |||||| |||||||||||||| || | | Sbjct 11065 CAATCCGACACTTAGATAATTTTGCTTTGCAATGATAAGAAGAGCCGACATCAAAAAACC 11124 Query 163 AAAAAGCAACGTCGCTATGAACGCTT-GGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221 | ||||||||||| ||||| || ||| | || |||| ||| ||| ||| |||||| Sbjct 11125 ATAAAGCAACGTCACTATGGACACTTAGTAAGCTACAATAAAGTCATCTATGTAGTAACT 11184 Query 222 TTTCTGGCACCTC 234 |||| |||||| Sbjct 11185 TTTCCAACACCTC 11197 >seq63 Length=383151 Score = 75.2 bits (82), Expect = 2e-11 Identities = 55/64 (86%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| ||||||| ||| |||||||||||| |||| ||||||||||||||||||||| | Sbjct 210695 GTCAACAGTAGGACGAAAGTAACCTGTCTCACGACGATCTAAACCCAGCTCACGTTCCTT 210754 Query 90 ATTA 93 ||| Sbjct 210755 TTTA 210758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854338850592