Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1054 172 1e-40 seq377 132 9e-29 >seq1054 Length=16975 Score = 172 bits (190), Expect = 1e-40 Identities = 196/258 (76%), Gaps = 5/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 || |||||||||| | ||| | ||||| || | ||||| | |||||||||||||| Sbjct 3765 CTACTTAGAGGGATAAGCGGTGTTTAGCCGCACGA-GATTGAG-CGATAACAGGTCTGTG 3708 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||| |||| |||||||||||||| ||| ||| || | | | || Sbjct 3707 ATGCCCTTAGATGTTCGGGGCTGCACGCGCGCTACAATGAAAGAAACAGCTGGCTTGTC- 3649 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 | | ||| ||||| | ||||| | | || ||| |||| |||||| | |||| Sbjct 3648 -CATTACCGAAAGGTATTGGTAAACCGTTGAATATCTTCCGTGACCGGGATAAGGAATTG 3590 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| || || |||||||||| ||||||||| | | ||||||||| |||| ||||| Sbjct 3589 TAATTATTCCTTTTGAACGAGGAATTCCTAGTAAGTGTGAGTCATCAGCTCGCGCTGATT 3530 Query 311 ACGTCCCTGCCCTTTGTA 328 ||||||||||| ||| || Sbjct 3529 ACGTCCCTGCCATTTATA 3512 >seq377 Length=118935 Score = 132 bits (146), Expect = 9e-29 Identities = 142/184 (77%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 117 ATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGC 176 |||||||||||||||||||||| ||||||| |||| |||||||||||||| || ||| Sbjct 75308 ATAACAGGTCTGTGATGCCCTTGGATGTTCGGGGCTGCACGCGCGCTACAATGGAAGAAA 75249 Query 177 CAACGAGTTCATCACCTTGGCCGGAAGGT-CTGGGTAATCTTGTTAAACTCTGTCGTGCT 235 || | || | | || | ||| ||||| ||| |||| | | || ||| |||| Sbjct 75248 CAGCTAG--CTTGTCCATTACCGAAAGGTGCTGATAAATCGT-TGAATATCTTCCGTGAC 75192 Query 236 GGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCAT 295 ||||||| | |||| ||||||| ||||| |||||||||| ||||||||| | | ||||| Sbjct 75191 CGGGATAGGGAATTGTAATTATTCCTCTTGAACGAGGAATCCCTAGTAAGTGTGAGTCAT 75132 Query 296 CAGC 299 |||| Sbjct 75131 CAGC 75128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947132208896