Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq4727 102 1e-19 seq5862 100 4e-19 seq774 84.2 3e-14 seq24699 82.4 1e-13 seq2235 77.0 5e-12 seq1709 75.2 2e-11 seq14288 73.4 6e-11 seq8607 73.4 6e-11 seq2697 73.4 6e-11 seq2688 73.4 6e-11 >seq4727 Length=5403 Score = 102 bits (112), Expect = 1e-19 Identities = 106/135 (79%), Gaps = 3/135 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||| || | ||||||||| | ||||||||||| ||| Sbjct 52 GTACAAAGGGCAGGGACGTAATCAACGTGATC-TGATGACTCACACTTACTAGGAA-TTC 109 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| ||| || ||||||||| | ||| | |||||| | | |||||| | || Sbjct 110 CTCGTTCAAGGGAAATAATTGCAATTTCCGATCTCGATCACGGAGGATTTTCAAGCGGTT 169 Query 120 ACCCGGACCTGTCGG 134 ||| |||| |||| Sbjct 170 ACCAATACCTTTCGG 184 >seq5862 Length=3568 Score = 100 bits (110), Expect = 4e-19 Identities = 85/102 (83%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||| || | |||||||| ||||||||||||| ||| Sbjct 2778 GTACAAAGGGCAGGGACGTAATCAACGTGAAC-TGATGACTTACGCTTACTAGGAA-TTC 2835 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG 102 |||||| ||| || ||||||||| | ||||| |||||| Sbjct 2836 CTCGTTCAAGGGAAATAATTGCAATTCCCGATCCCGATCACG 2877 >seq774 Length=101805 Score = 84.2 bits (92), Expect = 3e-14 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||| ||||||||||| ||||| || | ||||||||| | ||||||||||| ||| Sbjct 79970 GTACAAAGAGCAGGGACGTAATCAACATGAAC-TGATGACTCACACTTACTAGGAA-TTC 79913 Query 61 CTCGTTGAAGACCAACAATTGCAAT 85 |||||| ||| || ||||||||| Sbjct 79912 CTCGTTCAAGGGAAATAATTGCAAT 79888 >seq24699 Length=228 Score = 82.4 bits (90), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 4/118 (3%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCT--TGATGACTCGC-GCTTACTAGGAATT 58 ||||||||||||||| ||| |||||| ||||| | |||| || | ||||||||||| | Sbjct 1 TACAAAGGGCAGGGATGTAATCAACGTGAGCTAATAATGATTCACAACTTACTAGGAA-T 59 Query 59 TCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAG 116 |||||||| ||| || ||||||||| | |||| || ||| | | |||||||| Sbjct 60 TCCTCGTTTAAGGTAAATAATTGCAATTCTTGATCCTGATTACGGAGGATTTTCAAAG 117 >seq2235 Length=13418 Score = 77.0 bits (84), Expect = 5e-12 Identities = 55/61 (90%), Gaps = 2/61 (3%) Strand=Plus/Minus Query 167 TAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 |||| ||||||| |||| |||||||||||||||||||||| ||||||||| ||| ||||| Sbjct 12831 TAGCACGCGTGCAGCCCTGAACATCTAAGGGCATCACAGATCTGTTATTG-CTC-AACTT 12774 Query 227 C 227 | Sbjct 12773 C 12773 >seq1709 Length=65758 Score = 75.2 bits (82), Expect = 2e-11 Identities = 46/49 (94%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 162 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTG 210 ||||||||||||||||| |||| | |||||||||||||||||||||||| Sbjct 65710 CAGTGTAGCGCGCGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTG 65758 >seq14288 Length=1091 Score = 73.4 bits (80), Expect = 6e-11 Identities = 86/114 (75%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 || ||||||||||||| ||| |||||| || | ||||| ||| | |||| ||| ||||| Sbjct 292 GTGCAAAGGGCAGGGATGTAATCAACGTGAAC-TGATGGCTCACACTTATTAGAAATTT- 349 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA 114 ||||| ||| || ||||||||| || || || || ||| | | |||||| Sbjct 350 TTCGTTCAAGGGAAATAATTGCAATTCTCGATTCCGATGACGGAGGATTTTCAA 403 >seq8607 Length=8035 Score = 73.4 bits (80), Expect = 6e-11 Identities = 66/79 (84%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 150 CGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCT-AAGGGCATCACAGACC 208 |||||| | | |||| |||||||||||| ||| | |||||| ||||||||||||||| Sbjct 2844 CGTTGATTCCTCCAGTATAGCGCGCGTGCAACCCTGGACATCTTAAGGGCATCACAGACT 2785 Query 209 TGTTATTGCCTCAAACTTC 227 |||||||| ||| |||||| Sbjct 2784 TGTTATTG-CTC-AACTTC 2768 >seq2697 Length=3241 Score = 73.4 bits (80), Expect = 6e-11 Identities = 97/129 (75%), Gaps = 7/129 (5%) Strand=Plus/Minus Query 103 ATGAAAT-TTCAAA---GATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATA 158 || |||| |||||| | ||||| |||| |||| | ||| | || | || ||| | Sbjct 2149 ATTAAATATTCAAATGGGGTTACCAATACCTTTCGGTAATGGTTACAG-CACGCTGATTC 2091 Query 159 CATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 218 | | ||||||||| ||||| ||| |||||||||| ||||||||||||||||||| | Sbjct 2090 CTCCGGTGTAGCGCACGTGCAACCCTCGACATCTAAGGACATCACAGACCTGTTATTG-C 2032 Query 219 TCAAACTTC 227 || |||||| Sbjct 2031 TC-AACTTC 2024 >seq2688 Length=6149 Score = 73.4 bits (80), Expect = 6e-11 Identities = 91/121 (75%), Gaps = 9/121 (7%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 ||||||||||||| ||||| | |||| || | ||||||||| ||||||| ||| |||| Sbjct 2590 TACAAAGGGCAGGAACGTAATGAACGTGAAC-TGATGACTCATACTTACTAAGAA-TTCC 2647 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTAC 121 ||||| ||| || ||||||||| |||| || | ||| | |||||| | |||| Sbjct 2648 TCGTTCAAGGGAAATAATTGCAAT------TCCCGATTCCAATG-ATTTTCAAGGGTTAC 2700 Query 122 C 122 | Sbjct 2701 C 2701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751813795400