Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq9760 107 8e-21 seq1433 105 3e-20 seq710 105 3e-20 seq5718 86.0 3e-14 seq686 84.2 9e-14 seq5499 75.2 5e-11 >seq9760 Length=3598 Score = 107 bits (118), Expect = 8e-21 Identities = 105/133 (79%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||||||||||||| || |||||| | || ||| |||||| || ||||| ||||||| Sbjct 3207 GAGTCGAGTTGTTTGAGATTGCAGCCCAAAGAGGGTGGTAAACCTCATCTAAGGCTAAAT 3266 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | | ||| |||||||||||| ||||||| |||| ||||| || |||| |||||| | Sbjct 3267 A-CGACCACGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGCAAAGAACTTTGAA 3325 Query 159 AAGAGAGTTAAAA 171 | |||||| ||| Sbjct 3326 GAAAGAGTTCAAA 3338 >seq1433 Length=14519 Score = 105 bits (116), Expect = 3e-20 Identities = 98/122 (80%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGA--AACTC 621 || |||||| ||||||||| |||||| | |||||| ||| |||||||| |||| ||||| Sbjct 14308 TGCTGGGACTCGAAAGATGATGAACTGTACCTGAACAGGATGAAGCCAAAGGAGAAACTC 14367 Query 622 TGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 || || | || || |||| ||||| | |||||||||| |||| | || |||||||||| Sbjct 14368 TGATGAAAGCCCGAAGCGATTCTGAC-TGCAAATCGACCGTCTGACTTTAGTATAGGGGC 14426 Query 682 GA 683 || Sbjct 14427 GA 14428 >seq710 Length=53512 Score = 105 bits (116), Expect = 3e-20 Identities = 121/161 (75%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||| || |||||| | | ||| ||||| || ||||| ||||||| Sbjct 19337 GAGTCGGGTTGTTTGAGATTGCAGCCCANAGAGGGTGGTAANCCTCATCTAAGGCTAAAT 19396 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | | ||| |||||||||||| ||||||| |||| |||| || |||| |||||| | Sbjct 19397 AC-GACCACGAGACCGATAGCAAACAAGTACCGTGAGGGAAAATTGCAAAGAACTTTGAA 19455 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| | ||| | |||| || Sbjct 19456 GAGAGAGTTCAAGAGGGCGTGAAACCGCTGAGATGGAAACG 19496 >seq5718 Length=3511 Score = 86.0 bits (94), Expect = 3e-14 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 597 AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATC 656 || ||| |||||||||||||||||||||| || | || |||| ||||| |||||||||| Sbjct 3282 AAAAGGATGAAGCCAGAGGAAACTCTGGTAGAAGTCCGAAGCGATTCTGACGTGCAAATC 3341 Query 657 GATCGTCAAATTTGGGTATA 676 ||||||| | || |||||| Sbjct 3342 GATCGTCTGACTTTGGTATA 3361 >seq686 Length=34971 Score = 84.2 bits (92), Expect = 9e-14 Identities = 90/117 (77%), Gaps = 3/117 (3%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 || || || | ||| |||||||| ||| | | | | | |||||||| ||||||||||| Sbjct 33330 TGCTGAGATCTGAAGGATGGTGAGCTA--CATAAGCAAGATGAAGCCA-AGGAAACTCTG 33274 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 || ||| || |||| ||||| |||||||||||||| || |||| | |||||||| Sbjct 33273 GTAGAGATCCGAAGCGATTCTGACGTGCAAATCGATCATCCGATTTTGTTATAGGGG 33217 >seq5499 Length=13722 Score = 75.2 bits (82), Expect = 5e-11 Identities = 93/126 (74%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATT-TCTTCTAAAGCTAAA 98 ||| ||||||||||| || |||||| | || ||| | |||| | || |||| |||||| Sbjct 1930 GAGCCGAGTTGTTTGAGATTGCAGCCCAAAGAGGGTGATAAACTATCATCTACGGCTAAA 1871 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 ||| | |||||||||||| | ||||| |||| |||| || ||| |||| | | Sbjct 1870 TATGATCACGAGACCGATAGCAAATAAGTACCGTGAGGAAAAGTTGCAAAAAACTTCGAA 1811 Query 159 AAGAGA 164 |||||| Sbjct 1810 AAGAGA 1805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079451738000