Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq7739 149 1e-33 seq16154 132 8e-29 seq2364 114 2e-23 seq2697 104 4e-20 seq4277 96.9 6e-18 seq1093 95.1 2e-17 seq5635 91.5 2e-16 seq2059 84.2 3e-14 seq5657 82.4 1e-13 seq1355 80.6 4e-13 seq2235 77.0 5e-12 seq1709 75.2 2e-11 >seq7739 Length=3792 Score = 149 bits (164), Expect = 1e-33 Identities = 173/232 (75%), Gaps = 22/232 (9%) Strand=Plus/Minus Query 27 CGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATT 86 ||||||| ||| |||||||||||||||||||||||||||||| |||| |||| || Sbjct 1391 CGCGTGCAACCCTAGGCATCTAAGGGCATCACAGACCTGTTATTGC-TCAA-CTTCGCTT 1334 Query 87 GGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGGCTATT 146 | ||| ||||||||| | || || || || | | ||||| Sbjct 1333 G---------------TCCTTCTAAGAAGTTGGACA--AA--ATTATCCA-GTAACTATT 1294 Query 147 TAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAA 206 || ||| || ||| || ||||||||||||| ||||||||||||||| |||||||| Sbjct 1293 TAATAGGCTAGAGTCACGCTCGTTATCGGAATAAACCAGACAAATCACNNNNCCAACTAA 1234 Query 207 GAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||| ||| |||||| ||||||||| | |||||||| Sbjct 1233 GAACGGCCATGCACCACCAACCACCGAATCATGAAAGAGCTCTGAATCTGTC 1182 >seq16154 Length=863 Score = 132 bits (146), Expect = 8e-29 Identities = 165/223 (74%), Gaps = 10/223 (4%) Strand=Plus/Minus Query 29 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGG 88 ||||| | || | ||||||||| |||||| |||||||||||||| |||||| || Sbjct 264 CGTGCAGTCCTGGACATCTAAGAGCATCATAGACCTGTTATTGCAC--AACTTCATACGG 207 Query 89 CTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA---CCAACCATAGTCGATGGGGCTAT 145 || | || | |||||||||||||| | | |||| || || | | |||| Sbjct 206 CTAAACACCGCTTGTCCCTCTAAGAAGTTATCTGGACCCAAAAATTATCCA-GTAACTAT 148 Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 || | ||| || |||||| |||||||| |||| ||| |||||||||||||||||||||| Sbjct 147 TTGGTAGGCTAGAGTCTCGCTCGTTATCAGAATAAACAAGACAAATCACTCCACCAACTA 88 Query 206 AG----AACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244 || |||||||||||| ||| | ||| ||||| |||||| Sbjct 87 AGAACGAACGGCCATGCATCACTAACCACCAAATCATGAAAGA 45 >seq2364 Length=16405 Score = 114 bits (126), Expect = 2e-23 Identities = 139/183 (76%), Gaps = 10/183 (5%) Strand=Plus/Minus Query 47 TAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTC 104 ||||| |||||||||||||||||||| || | ||| ||||| |||| | | ||| Sbjct 3860 TAAGGACATCACAGACCTGTTATTGC-TCTA-CTTTATGTGGCT--AAGCACCGCTTGTC 3805 Query 105 CCTCTAAGAAGCCAGCC--ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCT 162 | ||||||||| | || || || || | ||||||| ||| || |||| Sbjct 3804 CGTCTAAGAAGTTGTCTGGACAAA--ATTATCCAGTAATTTATTTAGTAGGCTAGAGTCT 3747 Query 163 CGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCA 222 || ||||||| ||||| ||||||||||||||||| |||||||||||| |||||||||||| Sbjct 3746 CGCTCGTTATNGGAATAAACCAGACAAATCACTCTACCAACTAAGAAAGGCCATGCACCA 3687 Query 223 CCA 225 ||| Sbjct 3686 CCA 3684 >seq2697 Length=3241 Score = 104 bits (114), Expect = 4e-20 Identities = 147/201 (73%), Gaps = 13/201 (6%) Strand=Plus/Minus Query 19 GTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAA 78 ||||||||| ||||| ||| |||||||||| |||||||||||||||||||| |||| Sbjct 2085 GTGTAGCGCACGTGCAACCCTCGACATCTAAGGACATCACAGACCTGTTATTGC-TCAA- 2028 Query 79 CTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATG 138 |||| |||| | || | ||| ||| || | | || || || | Sbjct 2027 CTTCATGCGGCTAAACAGCACTTGTCTGTCTG-GA------CTAAGAA--ATTATCCA-- 1979 Query 139 GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCA 198 | ||||| || ||| || ||||| ||||||||||||| |||||| |||||||| ||| Sbjct 1978 GAACTATTCAGTAGGCTAGAATCTCGCTCGTTATCGGAATAAACCAGGCAAATCACCCCA 1919 Query 199 CCAACTAAGAACGGCCATGCA 219 ||||||||||||||| || || Sbjct 1918 CCAACTAAGAACGGCTATCCA 1898 >seq4277 Length=27829 Score = 96.9 bits (106), Expect = 6e-18 Identities = 145/200 (73%), Gaps = 16/200 (8%) Strand=Plus/Plus Query 26 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGT----TATTGCCTCAAACTT 81 || ||||| ||| | ||||||||||| ||||||||||||| ||||| | ||||| Sbjct 1979 GCTCGTGCAACCCTGGACATCTAAGGGTATCACAGACCTGTCTGTTATTGTTT--AACTT 2036 Query 82 CCATTGGCTGGAAGCCAATAGTCCCT-CTAAGAAGCC-----AGCCA--CCAACCATAGT 133 | |||| | ||| | |||||| |||||||| | | | | || || | Sbjct 2037 CATGCGGCTAAACACCACTTGTCCCTTCTAAGAAGTTGTTTGAACAATGCAAAAAATTAT 2096 Query 134 CGATGGGGCTATTTAGCAGGTTAAG-GTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 | | |||||||| ||| ||| |||||| ||||||||||||| | |||||||||| Sbjct 2097 TCA-GTAACTATTTAGTAGGCTAAAAGTCTCGCTCGTTATCGGAATACAACAGACAAATC 2155 Query 193 ACTCCACCAACTAAGAACGG 212 |||||||||||||||||||| Sbjct 2156 ACTCCACCAACTAAGAACGG 2175 >seq1093 Length=63733 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||||| | |||||||| || | | ||||||||||||| || |||| |||||||| || | Sbjct 26226 CTATTAAACAGGTTAAAGTTTTGCTCGTTATCGGAATAAATCAGATAAATCACTTCAATA 26167 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | |||||||||||||| | || || | |||||| |||| | || ||||||| || Sbjct 26166 ATTAAGAACGGCCATGTAACATCAATTACCGAATCATGAAAAAACTTTCAATCTATC 26110 >seq5635 Length=10308 Score = 91.5 bits (100), Expect = 2e-16 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||| ||| || ||||| ||| ||||| |||| | |||||||||||||||||||| Sbjct 3506 CTATTTAGTAGGCTAGAGTCTCTTTCATTATCCGAATAAGCCAGACAAATCACTCCACCA 3447 Query 202 ACTAAGAACGGCCAT 216 ||||||| ||||||| Sbjct 3446 ACTAAGAGCGGCCAT 3432 >seq2059 Length=31114 Score = 84.2 bits (92), Expect = 3e-14 Identities = 71/86 (83%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 171 ATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 230 || ||||| ||||||| ||||||| ||||||||||||| || |||||||||| | | || Sbjct 7834 ATTGGAATAAACCAGAAAAATCACCTCACCAACTAAGAATGGTCATGCACCACGAACTAT 7775 Query 231 AGAATCAAGAAAGAGCTATCAATCTG 256 |||| | || |||||| |||||||| Sbjct 7774 CGAATTATGAGAGAGCT-TCAATCTG 7750 >seq5657 Length=2009 Score = 82.4 bits (90), Expect = 1e-13 Identities = 98/137 (72%), Gaps = 21/137 (15%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||||||| ||| || ||||| | |||| |||||| ||||||| |||||||| ||| | Sbjct 1668 CTATTTAATAGGCTAGAATCTCGCTTGTTA-CGGAATAAACCAGATAAATCACTTCACTA 1726 Query 202 ACT--------------------AAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||| ||||||||||||||||||||| ||| || ||| ||| Sbjct 1727 ACTAAGAACGACCATGCGCCACTAAGAACGGCCATGCACCACCAACCACCGANTCATGAA 1786 Query 242 AGAGCTATCAATCTGTC 258 |||||| |||||||||| Sbjct 1787 AGAGCTCTCAATCTGTC 1803 >seq1355 Length=8175 Score = 80.6 bits (88), Expect = 4e-13 Identities = 79/101 (78%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAAC-GGCCATG 217 || ||| ||||||| ||||| ||| ||| |||||| |||| ||||||||||| ||| Sbjct 5028 GTATCGCTCGTTATTGGAATAAACAAGAAAAATCATTCCATCAACTAAGAACAAATGATG 5087 Query 218 CACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || ||||| || |||||| || |||||| ||||| |||| Sbjct 5088 CAGCACCAATCACCGAATCATGAGAGAGCTCTCAATTTGTC 5128 >seq2235 Length=13418 Score = 77.0 bits (84), Expect = 5e-12 Identities = 55/61 (90%), Gaps = 2/61 (3%) Strand=Plus/Minus Query 22 TAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 81 |||| ||||||| |||| |||||||||||||||||||||| ||||||||| ||| ||||| Sbjct 12831 TAGCACGCGTGCAGCCCTGAACATCTAAGGGCATCACAGATCTGTTATTG-CTC-AACTT 12774 Query 82 C 82 | Sbjct 12773 C 12773 >seq1709 Length=65758 Score = 75.2 bits (82), Expect = 2e-11 Identities = 46/49 (94%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTG 65 ||||||||||||||||| |||| | |||||||||||||||||||||||| Sbjct 65710 CAGTGTAGCGCGCGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTG 65758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796602702360