Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq4926 279 2e-72 seq4789 206 9e-51 seq5624 185 3e-44 seq912 158 4e-36 seq6594 152 2e-34 seq840 149 2e-33 seq1345 143 9e-32 seq6943 136 1e-29 seq2888 132 2e-28 seq21215 96.9 1e-17 seq8336 78.8 3e-12 seq10980 77.0 1e-11 >seq4926 Length=4618 Score = 279 bits (308), Expect = 2e-72 Identities = 172/185 (93%), Gaps = 1/185 (1%) Strand=Plus/Plus Query 286 GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGT 345 |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 535 GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGNNNNNNNNAAGCCCGTTCCCTTGGCTGT 594 Query 346 GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 595 GGTTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 654 Query 406 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 465 | |||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||| Sbjct 655 CGAATTAGATGACGAGGCATTTTGCTACCTTAAGAGAGTCATAGTTACT-CCGTCGTTTA 713 Query 466 CCCGC 470 ||||| Sbjct 714 CCCGC 718 >seq4789 Length=4208 Score = 206 bits (228), Expect = 9e-51 Identities = 145/164 (88%), Gaps = 5/164 (3%) Strand=Plus/Minus Query 324 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGA---AT 380 ||||||||||||||||| || |||||||||| |||| ||||||||| ||||||| || Sbjct 2231 CCAAGCCCGTTCCCTTGACTATGGTTTCGCTGGATATCAGATAGGGAGAGTGGGAGAAAT 2172 Query 381 CTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGA 440 ||||||||||||||||||||| |||| ||||||||||||||||||||||||| | ||||| Sbjct 2171 CTCGTTAATCCATTCATGCGCNTCACGAATTAGATGACGAGGCATTTGGCTAACCTAAGA 2112 Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484 |||||||||| |||||||| |||||||||| ||||| ||||| Sbjct 2111 AAGTCATAGTTGCTCCCGCCATTTACCCGCGATTGGT--AATTT 2070 >seq5624 Length=6455 Score = 185 bits (204), Expect = 3e-44 Identities = 167/210 (80%), Gaps = 14/210 (7%) Strand=Plus/Plus Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 ||||| ||||| || ||||||| ||| ||||||||||| |||||| ||| || Sbjct 3440 TTTCCTCGCTGTTT--GCCAAGCTCGT--------CTGTGGTTTCGTTAGATAATAGGTA 3489 Query 367 GGGACAGTGGGAATCTCGTTA----ATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 || |||||||||||||| ||| ||||||| ||| || |||| |||||||||| ||| Sbjct 3490 GGAACAGTGGGAATCTCATTAATCCATCCATTTATGTGCATCACGAATTAGATGATGAGC 3549 Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 482 |||| ||| |||||||||| ||| |||||||| ||||||||| ||| || ||||||| Sbjct 3550 TATTTTGCTTCCTTAAGAGAATCACAGTTACTCTCGCCGTTTATCCGTATTTAGTTGAAT 3609 Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGC 512 || |||||||| ||||||||| ||||| || Sbjct 3610 TTTTTCACTTTTACATTCAGAACACTGAGC 3639 >seq912 Length=45941 Score = 158 bits (174), Expect = 4e-36 Identities = 110/125 (88%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 396 ATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTC 455 |||||||||| ||||||||||||| ||| ||||||| ||| || |||||||||| | Sbjct 14980 ATGCGCGTCATGAATTAGATGACGAAGCACTTGGCTATTTTAGAGGATTCATAGTTACGC 15039 Query 456 CCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGA 515 ||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 15040 CCGCCGTTTGCCCGTGCTTGGTTGAATTTCTTCACTTCTACATTCAGAGCACTGGGCAGA 15099 Query 516 AATCA 520 ||||| Sbjct 15100 AATCA 15104 >seq6594 Length=2246 Score = 152 bits (168), Expect = 2e-34 Identities = 102/115 (89%), Gaps = 8/115 (7%) Strand=Plus/Minus Query 406 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 465 |||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 1484 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAG--------ACTTCCGCCGTTTA 1433 Query 466 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 |||| ||||||||||||||||||||||| | |||||||||| ||||||||||||| Sbjct 1432 CCCGTGCTTGGTTGAATTTCTTCACTTTTATATTCAGAGCATTGGGCAGAAATCA 1378 >seq840 Length=84055 Score = 149 bits (164), Expect = 2e-33 Identities = 129/157 (82%), Gaps = 6/157 (4%) Strand=Plus/Plus Query 323 GCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCT 382 |||||| | ||||||||||| |||| ||||| |||||| | ||||||||||||| Sbjct 83879 GCCAAGACTGTTCCCTTGGCCATGGTC-CGCTAT----TAGATAAGTACAGTGGGAATCT 83933 Query 383 CGTTAATCCATTCATGCGCGTCA-CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 441 ||| || ||||||| || ||| | |||||||| ||||||||||||||||||||||||| Sbjct 83934 TGTTTATTTATTCATGTGCATCAACGAATTAGATAACGAGGCATTTGGCTACCTTAAGAG 83993 Query 442 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478 |||||||||||| || || ||||| |||| |||||| Sbjct 83994 AGTCATAGTTACCCCTGCTGTTTATCCGCATTTGGTT 84030 >seq1345 Length=15983 Score = 143 bits (158), Expect = 9e-32 Identities = 153/203 (75%), Gaps = 18/203 (9%) Strand=Plus/Plus Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 || ||| |||||||||||||||||| ||| | ||||||| | ||| |||||||| | Sbjct 2271 CAGGCTTAACAGGGTCTTCTTTCCCAGCTATGTTTGCCAAGCACTTTCTCTTGGCTGCGA 2330 Query 348 TTTCGCTAG--ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA-----TTCATGCG 400 ||| ||||| |||||||||| ||| ||||| ||||||||||| || ||||| || Sbjct 2331 TTTTGCTAGATATAGTAGATAAGGATAGTGGATATCTCGTTAATTCATAACGTTCATACG 2390 Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 460 | | | ||||||||||||| ||||||||||||||||| ||||| || || Sbjct 2391 CCTTATGAATTAGATGACGAAGCATTTGGCTACCTTAA-----------TTACTTCCACC 2439 Query 461 GTTTACCCGCGCTTGGTTGAATT 483 ||||| | ||||| ||||||| Sbjct 2440 GTTTATGCATGCTTGATTGAATT 2462 >seq6943 Length=9416 Score = 136 bits (150), Expect = 1e-29 Identities = 124/154 (81%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 341 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAA-TCCATTCATGC 399 ||| || |||| | |||||||| ||||| ||| ||||||||||||||| ||||| | | | Sbjct 5375 GCTATGATTTCACAAGATAGTAAATAGG-ACAATGGGAATCTCGTTAAATCCATACTTAC 5317 Query 400 GCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGC 459 | ||||| ||||| | ||||||||||||||||| | |||| | |||||| || | |||| Sbjct 5316 GTGTCACGAATTAAACGACGAGGCATTTGGCTATTTCAAGAAAATCATAGCTATTTCCGC 5257 Query 460 CGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 | |||| | |||| || |||||||| ||||||| Sbjct 5256 CATTTATCTGCGCCTGCTTGAATTTTCTCACTTT 5223 >seq2888 Length=11147 Score = 132 bits (146), Expect = 2e-28 Identities = 128/163 (79%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 293 TCAACAGGGTCTTCTTT-CCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 351 |||| || || |||||| |||| ||| | ||||||| | || ||||||| | | || Sbjct 6111 TCAATAGAGTTTTCTTTACCCCCCTGTGTTTGCCAAGCTTGCTCATTTGGCTGCGATATC 6170 Query 352 GCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATT 411 |||||| ||||||||||||| ||||||||| |||||||||||||| || |||| ||| Sbjct 6171 GCTAGACTGTAGATAGGGACAATGGGAATCTTGTTAATCCATTCATACGTGTCATAAATC 6230 Query 412 AGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 454 |||||| ||| ||||||||| | ||||| | | |||||||| Sbjct 6231 AGATGATTAGGAATTTGGCTATCGTAAGAAAACCGTAGTTACT 6273 >seq21215 Length=417 Score = 96.9 bits (106), Expect = 1e-17 Identities = 89/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 289 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGT 348 ||||| |||||| | |||||||| |||| | | ||| | | |||| |||| ||| || Sbjct 275 AAGCTTAACAGGATATTCTTTCCTCGCTATGTTTGTCAATCTCATTCCTTTGGTTGTAGT 334 Query 349 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA--TTCATG 398 |||||||||||||||||||| ||||| |||||| |||||| || |||||| Sbjct 335 TTCGCTAGATAGTAGATAGGAACAGTAGGAATCATGTTAATTCATGTTCATG 386 >seq8336 Length=1354 Score = 78.8 bits (86), Expect = 3e-12 Identities = 43/43 (100%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 346 GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAA 388 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAA 43 >seq10980 Length=1820 Score = 77.0 bits (84), Expect = 1e-11 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 282 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 ||||||||||||||||||||||||| |||||||||| | ||||| |||||||||| Sbjct 320 TAGAGTCAAGCTCAACAGGGTCTTCCTTCCCCGCTGTGTTTGCCAAACCCGTTCCCT 376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634782042880