Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq22751 244 4e-60 seq24227 241 5e-59 seq24591 159 1e-34 >seq22751 Length=317 Score = 244 bits (270), Expect = 4e-60 Identities = 143/148 (97%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 5755 GGGAGGTAAACGGGCATTTCAGCTCAAGGCCATTGCCGTCACTGCATAAACCATCGGGAG 5814 |||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 141 GGGAGGTAAACGGGTATTTCAGTTCAAGGCCGTTGCCGTCACTGCATAAACCATCGGGAG 200 Query 5815 AGCAGGCGGTACGCATACTTTCGTCGCGATAGATGATCGGGGATTCAGTAACATTCACGC 5874 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 201 AGCAGGCGGTACGCATACTTTCGTCGCGATAGATGATCGGGGATTCAGTAACATTCACGC 260 Query 5875 CGGAAGTGAACTCAAAGAGGGTTCTGGC 5902 |||||||||| ||||| ||||||||||| Sbjct 261 CGGAAGTGAATTCAAACAGGGTTCTGGC 288 >seq24227 Length=246 Score = 241 bits (266), Expect = 5e-59 Identities = 201/246 (82%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 46255 CTGCGACCAGATGGTCCCTGATGGTTTCGGGGGCACAGAGCCGCGGATGACCTTTAATGC 46314 |||||||||| || || || || || || ||||| |||||||| || |||| |||||| Sbjct 246 CTGCGACCAGTCAGTGCCGGACGGCTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGC 187 Query 46315 GTACCTGTCACAACAGCGTAAGGCGTGGGACGTTCTCAGTGATTTCTGCTCGGCGATGCG 46374 ||||||| | |||||||||||||||||| || ||||| |||||||||||||||||||| Sbjct 186 GTACCTGACCACACAGCGTAAGGCGTGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCG 127 Query 46375 CTGTATGCCGGTATGGAACGGCCAGACGCTGACGTTCGTTCAGGACAGCCCGTCGGATGT 46434 ||||||||||||||||||||| ||||||||||||||||| |||||| | ||||||||| Sbjct 126 CTGTATGCCGGTATGGAACGGGCAGACGCTGACGTTCGTGCAGGACCGACCGTCGGATAA 67 Query 46435 GGTGTGGCCGTACACCAACAGTGATGTGGTGGTGGATGATAACGGCGTGGGGTTTCGCTA 46494 | |||| | || | | |||| |||||||| || ||| | |||| | ||| ||||| Sbjct 66 GACGTGGACCTATAACCGCAGTAATGTGGTGATGCCGGATGATGGCGCGCCGTTCCGCTA 7 Query 46495 CAGCTT 46500 |||||| Sbjct 6 CAGCTT 1 >seq24591 Length=232 Score = 159 bits (176), Expect = 1e-34 Identities = 153/195 (78%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 47114 GAAAAAGAAGCCATCGTGGATAACGGGGCGCACTTTGACGGCGACCAGAGCGGCACCCTG 47173 |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| || Sbjct 232 GAAAAAGAGGCCATCGTGGATAACGGGGCGCACTTTGACGGCGAACAGAGTGGCACGGTG 173 Query 47174 AACAGCGTCATCCCTCCGGCAGTGCAGCACCTGACGGTGGAGGTGAGTGCAGCTGACAGC 47233 || | |||| || || || |||||||||||||| | || || | ||||| ||||| Sbjct 172 AATGGTGTCACGCCGCCAGCGGTGCAGCACCTGACCGCAGAAGTCACTGCAG---ACAGC 116 Query 47234 CAG---TATCTGGCGCAGGCGAAATGGGACACGCCGCGGGTGGTGAAGGGCGTGCGCTTC 47290 | |||| || || |||| ||||||||| ||| |||||||||||||||| | ||| Sbjct 115 GGGGAATATCAGGTGCTGGCGCGATGGGACACACCGAAGGTGGTGAAGGGCGTGAGTTTC 56 Query 47291 AGTCTGCGCCTGACC 47305 || || |||||| Sbjct 55 CTGCTCCGTCTGACC 41 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175492317521760